Detail information of GWHGAAEX011314/evm.TU.scaffold_37.57
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 3.00E-112 | FOG: PPR repeat |
| nr | gi|743785337|ref|XP_010921878.1| | 8.65E-157 | PREDICTED: pentatricopeptide repeat-containing protein At1g07740, mitochondrial [Elaeis guineensis] |
| Swissprot | tr|Q9LQQ1|PPR20_ARATH | 9.00E-113 | Pentatricopeptide repeat-containing protein At1g07740, mitochondrial (Precursor) |
| trEMBL | tr|M0TP40|M0TP40_MUSAM | 6.00E-137 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr8P09870_001} |
| TAIR | AT1G07740 | 3.00E-112 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000043 | 1400893 | 1402766 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX011314
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13812.5 | PPR_3 | 124 | 169 | 0.0034 |
| PF13041.5 | PPR_2 | 194 | 243 | 5.50E-15 |
| PF12854.6 | PPR_1 | 296 | 328 | 6.80E-12 |
| PF01535.19 | PPR | 339 | 367 | 0.28 |
| PF01535.19 | PPR | 374 | 402 | 0.1 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 13.380 |
| SRR2545915 | Juvenile tuber | 11.480 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 17.320 |
| SRR5643514 | five period of Gastrodia elata | 32.090 | |
| SRR5643515 | five period of Gastrodia elata | 24.100 | |
| SRR5643524 | five period of Gastrodia elata | 30.220 | |
| SRR5643525 | five period of Gastrodia elata | 21.840 | |
| SRR5643528 | five period of Gastrodia elata | 65.430 | |
| SRR5643658 | five period of Gastrodia elata | 29.860 | |
| SRR5643659 | five period of Gastrodia elata | 15.620 | |
| SRR5643660 | five period of Gastrodia elata | 17.270 | |
| SRR5643661 | five period of Gastrodia elata | 15.280 | |
| SRR5643662 | five period of Gastrodia elata | 18.660 | |
| SRR5643663 | five period of Gastrodia elata | 15.240 | |
| SRR5643664 | five period of Gastrodia elata | 15.740 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 16.550 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 12.760 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 15.110 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 24.750 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 20.380 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 20.180 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 17.800 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 19.530 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 13.450 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 12.540 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 13.330 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 13.330 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 17.16 |
| Juven | Juvenile tuber | 20.44 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 134.70 | |
| Mother_Juven | Mother tuber of Juvenile | 274.44 |