Gene detail

Detail information of GWHGAAEX011315/evm.TU.scaffold_37.58

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|374996140\|ref\|YP_004971639.1\|	3.00E-161	plasma-membrane calcium-translocating P-type ATPase [Desulfosporosinus orientis DSM 765]
KOG	KOG0204	0	Calcium transporting ATPase
nr	gi\|743785290\|ref\|XP_010921867.1\|	0	PREDICTED: probable calcium-transporting ATPase 5, plasma membrane-type [Elaeis guineensis]
Swissprot	tr\|Q2QY12\|ACA4_ORYSJ	0	Probable calcium-transporting ATPase 4, plasma membrane-type
trEMBL	tr\|W5FUU5\|W5FUU5_WHEAT	0	Calcium-transporting ATPase {ECO:0000256\|RuleBase:RU361146}
TAIR	AT2G41560	0	autoinhibited Ca(2+)-ATPase, isoform 4

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000043	1417227	1430855	+

Transcript Sequence
>GWHTAAEX011315 TGAGAACAGCGCGTGACATAAATTATATTTTGTTAGACTGCATTTCATCGAGCCACAGCTTGACTTTCAGCTCTCCCCTCGCTCCGGCGAAAAGCGGATCACAAGGATATGAGATGATTTTCGGCTGATTCAGAAACTCTTGATTCGAGAGATGGAGAGATTCTTGAAGGATAACTTCGATTTGCCATCGAAGAATCCGTCGGAGGAGGTGCAGAGGAGATGGCGAAGCGCCGTCGGACAGATCGTTCTGAATCGGAAGCGGAGGTTTCGGATGGTCGCTGATCTTGATAAGCGATCTGAGGCCGAGGCGCGCCGCCGCAGCATCCAGGAAAAGATTCGAATCGCTCTTTACGTGCAGAAGGCTGCTTTGACATTCATTGAAGCTGCAACAAATGTCGAATATCAGCTTCCCGAGGAGGCCAGGAAAGCCGGCTTCCAAATTAGCTCCGACGAACTGGCCACCATTGCTCGAGAACACAATTCAAAGGGCTTGAAATCCCATGGTGGCGTCGAAGGGATATCCAGAAAAGTTTCTGTCTCTCTAGAAGACGGTGTCAAAGCGAGTGACGTGACAGTTAGGCAGAACATTTTTGGGCCCAATAAATTCCCTGAGAAGCCCGCCAGAAGCTTCTGGATGTTTGTATGGGACGCATTGCAGGATTTAACTCTGATAATTCTGATGATCTGCGCTGCAGTTTCCATTGGAGTGGGGCTCGCCACCGAGGGGTGGCCGAAAGGAATGTACGACGGGCTTGGGATCATCTTGAGCATCTTTTTGGTTGTCTGTGTCACAGCCGTCAGCGACTACAAGCAGTCGCTGCAGTTCAGAGACTTGGATCGAGAAAAGAAGAAGATTTTTATGCAGGTGACCAGAGATGGCTACCGGCAGAAGGTCTCTATTTACGATCTGGTTGTTGGAGATGTCGTCCATCTATCTATTGGAGATCAGGTTCCAGCTGACGGGCTTTACATAGCTGGGTACTCATTATTAATAGACGAGTCGAGCTTGTCCGGAGAATCTGATCCGGTTCAAATCTCTAACGAAAAACCATTTCTGTTGGCCGGGACAAAGGTTCAAGATGGGTCGGCAAAGATGCTGGTCACTGCGGTCGGCATGAAGACTGAATGGGGACGGCTGATGGAAACCTTGAGCCAAGGAGGCGAAGACGAGACGCCTCTCCAGGTAAAGCTCAATGGCGTTGCCACAATCATTGGAAAGATTGGCCTGGTGTTTGCCACCTTAACGTTTGTCGTGCTCCTTGCTCGATTTTTGGTGGACAAAGTGATCCATGTTGGATTGCTGAAATGGTTCCCGGATGATGCCCTGCTGATACTGAACTACTTTGCGATCTCAGTCACCATAATTGTGGTTGCTGTCCCAGAGGGGCTTCCATTGGCCGTAACGTTGAGCCTTGCATTCGCGATGAAGAAACTGATGGATGATAGGGCACTTGTGAGGCATCTATCAGCGTGCGAGACGATGGGGTCTTCGGGATGCATCTGTACGGACAAGACGGGCACTTTGACAACCAATCACATGGTTGTTGATAAGATATGGATATGCGACACGTCCACTTCGTTCAGGAGCAAGGAGACTTCGGAGCATCTGAAGGAGAATTTAGCCAGAGATGTCGTGGACTGTCTCTTGCAGTGCATATTCCAGAACAGCGGCTCCGAAGTGGTGAAAGGGAAGGACGGGAAGAACGCGATTCTGGGCTCTCCGACCGAAACCGCGCTGCTGGAATTTGGCCTGGATCTCGAAGGAGTTGTAGACACCACCCGGCATCGGGACTGCACCAAACTGAAGGTGGAGCCTTTTAATTCGGTGAAGAAGAAGATGTCAGTTGTCGTTTCACTCCCGGACGGAGGTGTTCGAGCTTTCTGTAAAGGTGCATCTGAGAACATATTGCGAATGTGCGACAAGATCATCGATTGCGAAGGAAGGGCCACACCGCTATCCGAAAAGCAGACAAGAGCCGTGTCGGATGTCATTGCTCGTTTTGCCGATGATGCTCTGAGGACGTTGTGTCTGGCCTACAAGGATTTGGAGGAGGCGCCCGAAGGAGGCGAGATTTGCACCGAGTGCTACACCCTGATAGCCGTTTTTGGCATAAAGGATCCCATTCGGCCCGGCGTCAGGGAAGCAGTTCAGACCTGCGTGACTGCCGGGATAAAGGTGCGGATGGTGACCGGAGACAACATTAACACGGCCAAAGCCATAGCTAGAGAGTGCGGGATACTGACAGACGACGGCCTCGCTATTGAAGGGTCAGAATTCCGCAGCAAGAGTCCGGAGGAGATGAAGGAGTTGATTCCAAAGCTGGAGGTGATGGCTCGATCATTGCCTCTCGACAAGCATACTTTGGTGACCAATCTGCGAAACATGGGCGAAGTTGTTGCGGTCACCGGAGATGGGACCAATGATGCCCCAGCTTTGCATGAGGCGGACATAGGCCTTGCCATGGGCATCGCTGGAACAGAGGTTGCAAAAGAGAATGCCGATGTGATTGTGCTGGATGACAATTTCACTACCATCATAAACGTAGCCAAATGGGGCCGCGCTGTGTATATTAACATCCAAAAGTTTGTGCAGTTCCAGTTGACTGTTAACGTGGTTGCTCTCATGGTCAATTTTCTCTCAGCGTGCATATTAGGGAGTGCTCCTCTCACTGCGGTGCAGCTGCTGTGGGTCAACATGATCATGGACACGCTCGGTGCCTTGGCGCTAGCAACAGAACCCCCGAGCGATGAGATGATGAAGAGGCCGCCGACTGGCCGCGGCGAGAACTTCATCACGAAGGCTATGTGGAGGAACATCGCTGGCCAGAGTGTGTACCAGTTGCTCGTTCTAGGGACTCTCATGTTTTACGGGAAGCCCCTTCTTCGATTAAGTGGCCCCAATTCCGACATTGTTCTCAACACTTTCATCTTCAACACCTTTGTGTTCTGTCAGCTGTTCAACGAAGTAAACAGCAGGGAGATGGAGAAGATAAACATCTTTCGAGGAATTTTTGACGGCTGGATATTCTCAGCCGTTTTGATCTCGACAATTCTGTTTCAAATAGTCATCGTCGAGTTTCTTGGTGCATTTGCGAGCACCGTTCCCCTGAGCTGGCAACTATGGCTGCTCAGCATCCTCATTGGATCCGTCAGCTTGGTCGTCGCCGTCATACTGAAATGCATTCCGGCTGGCTACAGGAAGCTCCCGTCTCACGGCGAGAACGGGTATCAGCCCATTCCCGGAGGTCCCGAGGAAACCTGAAGAGGTAACTTGTGTGCTTCGGCATAAATTTTGCGTGTTTCTGTTAATAAGTTGGATAAAAGGTTATTTTCATAATTTTGGATTTTCTGGCTAAGTTATATTTTTAGTCGGCCCTTTCTAGAACTTCAAGGAGGCATGCAGGTTGCAGGATGCAAGCGCTCAGGGCTTGAAATTTTGAACTTTTGCAGATGCGACTTTTGCTGTGAAACTTTTTAGTGGTGGAAACTTTTTTATAAATTTTGATATTTTGTTACTGAAAATAGGAACACATTTTATGAATTAACATTTTCTACATCAAGAATTGTGTAGACTATATATAAATTAAGGTTAGCCTACTAACATTCAATACTAATTAATGATCA

Network for GWHGAAEX011315

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12515.7	CaATP_NAI	5	50	6.10E-20
PF00690.25	Cation_ATPase_N	117	183	2.10E-15
PF00122.19	E1-E2_ATPase	237	429	4.40E-40
PF00702.25	Hydrolase	449	766	2.50E-17
PF00689.20	Cation_ATPase_C	837	1010	1.00E-42

Protein Sequence

>GWHPAAEX011315
MERFLKDNFDLPSKNPSEEVQRRWRSAVGQIVLNRKRRFRMVADLDKRSEAEARRRSIQEKIRIALYVQKAALTFIEAATNVEYQLPEEARKAGFQISSDELATIAREHNSKGLKSHGGVEGISRKVSVSLEDGVKASDVTVRQNIFGPNKFPEKPARSFWMFVWDALQDLTLIILMICAAVSIGVGLATEGWPKGMYDGLGIILSIFLVVCVTAVSDYKQSLQFRDLDREKKKIFMQVTRDGYRQKVSIYDLVVGDVVHLSIGDQVPADGLYIAGYSLLIDESSLSGESDPVQISNEKPFLLAGTKVQDGSAKMLVTAVGMKTEWGRLMETLSQGGEDETPLQVKLNGVATIIGKIGLVFATLTFVVLLARFLVDKVIHVGLLKWFPDDALLILNYFAISVTIIVVAVPEGLPLAVTLSLAFAMKKLMDDRALVRHLSACETMGSSGCICTDKTGTLTTNHMVVDKIWICDTSTSFRSKETSEHLKENLARDVVDCLLQCIFQNSGSEVVKGKDGKNAILGSPTETALLEFGLDLEGVVDTTRHRDCTKLKVEPFNSVKKKMSVVVSLPDGGVRAFCKGASENILRMCDKIIDCEGRATPLSEKQTRAVSDVIARFADDALRTLCLAYKDLEEAPEGGEICTECYTLIAVFGIKDPIRPGVREAVQTCVTAGIKVRMVTGDNINTAKAIARECGILTDDGLAIEGSEFRSKSPEEMKELIPKLEVMARSLPLDKHTLVTNLRNMGEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKENADVIVLDDNFTTIINVAKWGRAVYINIQKFVQFQLTVNVVALMVNFLSACILGSAPLTAVQLLWVNMIMDTLGALALATEPPSDEMMKRPPTGRGENFITKAMWRNIAGQSVYQLLVLGTLMFYGKPLLRLSGPNSDIVLNTFIFNTFVFCQLFNEVNSREMEKINIFRGIFDGWIFSAVLISTILFQIVIVEFLGAFASTVPLSWQLWLLSILIGSVSLVVAVILKCIPAGYRKLPSHGENGYQPIPGGPEET

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0070588	Biological Process	calcium ion transmembrane transport
GO:0005388	Molecular Function	calcium-transporting ATPase activity
GO:0005524	Molecular Function	ATP binding
GO:0000166	Molecular Function	nucleotide binding
GO:0005516	Molecular Function	calmodulin binding
GO:0016020	Cellular Component	membrane
GO:0016021	Cellular Component	integral component of membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	44.940
SRP064423	SRR2545915	Juvenile tuber	39.330
SRP108465	SRR5643513	five period of Gastrodia elata	64.480
	SRR5643514	five period of Gastrodia elata	63.780
	SRR5643515	five period of Gastrodia elata	61.630
	SRR5643524	five period of Gastrodia elata	69.980
	SRR5643525	five period of Gastrodia elata	27.220
	SRR5643528	five period of Gastrodia elata	44.910
	SRR5643658	five period of Gastrodia elata	24.130
	SRR5643659	five period of Gastrodia elata	41.540
	SRR5643660	five period of Gastrodia elata	37.930
	SRR5643661	five period of Gastrodia elata	51.610
	SRR5643662	five period of Gastrodia elata	43.550
	SRR5643663	five period of Gastrodia elata	34.710
	SRR5643664	five period of Gastrodia elata	36.190
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	70.870
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	66.350
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	75.230
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	59.770
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	66.420
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	65.120
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	70.590
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	64.480
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	85.200
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	85.680
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	89.160
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	89.160
SRP279888	Gastro	Gastrodia elata tuber	51.41
	Juven	Juvenile tuber	53.62
	Mother_Gastro	Mother tuber of Gastrodia elata	77.38
	Mother_Juven	Mother tuber of Juvenile	124.94