Detail information of GWHGAAEX011320/evm.TU.scaffold_37.63
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|695027673|ref|XP_009401187.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At4g20740 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q9SVH3|PP328_ARATH | 0 | Pentatricopeptide repeat-containing protein At4g20740 |
| trEMBL | tr|D7SQ23|D7SQ23_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CBI17752.3} |
| TAIR | AT4G20740 | 0 | Pentatricopeptide repeat (PPR-like) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000043 | 1505189 | 1507372 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX011320
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 224 | 250 | 0.025 |
| PF01535.19 | PPR | 259 | 285 | 0.11 |
| PF13041.5 | PPR_2 | 291 | 340 | 1.50E-13 |
| PF01535.19 | PPR | 404 | 430 | 0.8 |
| PF01535.19 | PPR | 506 | 531 | 0.19 |
| PF13041.5 | PPR_2 | 539 | 587 | 6.80E-10 |
| PF01535.19 | PPR | 622 | 642 | 0.0039 |
| PF01535.19 | PPR | 650 | 674 | 0.27 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 3.760 |
| SRR2545915 | Juvenile tuber | 2.580 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 3.570 |
| SRR5643514 | five period of Gastrodia elata | 4.130 | |
| SRR5643515 | five period of Gastrodia elata | 3.890 | |
| SRR5643524 | five period of Gastrodia elata | 4.060 | |
| SRR5643525 | five period of Gastrodia elata | 5.770 | |
| SRR5643528 | five period of Gastrodia elata | 4.170 | |
| SRR5643658 | five period of Gastrodia elata | 3.870 | |
| SRR5643659 | five period of Gastrodia elata | 3.890 | |
| SRR5643660 | five period of Gastrodia elata | 4.770 | |
| SRR5643661 | five period of Gastrodia elata | 4.800 | |
| SRR5643662 | five period of Gastrodia elata | 7.320 | |
| SRR5643663 | five period of Gastrodia elata | 4.360 | |
| SRR5643664 | five period of Gastrodia elata | 4.570 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 3.930 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 4.770 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 4.640 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 4.160 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 3.570 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 3.140 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 3.570 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 2.620 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 4.020 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 3.690 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 4.640 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 4.640 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 4.56 |
| Juven | Juvenile tuber | 5.50 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 6.18 | |
| Mother_Juven | Mother tuber of Juvenile | 6.31 |