Detail information of GWHGAAEX011321/evm.TU.scaffold_37.64


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|557694902|ref|YP_008797956.1|8.00E-12ubiquitin-conjugating enzyme E2-like protein [Candidatus Caldiarchaeum subterraneum]
KOGKOG04211.00E-85Ubiquitin-protein ligase
nrgi|743845658|ref|XP_010938640.1|1.47E-100PREDICTED: ubiquitin-conjugating enzyme E2 20-like [Elaeis guineensis]
Swissprottr|Q9LJZ5|UBC19_ARATH3.00E-86Ubiquitin-conjugating enzyme E2 19
trEMBLtr|M0U188|M0U188_MUSAM2.00E-94Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr9P17810_001}
TAIRAT3G200601.00E-85ubiquitin-conjugating enzyme19

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000004315113911512434+
Transcript Sequence

Network for GWHGAAEX011321

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module2

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00179.25UQ_con481821.60E-46
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyUBC

KEGG pathway

KO Enzyme pathway mapID
K06688UBE2C, UBC11 Ubiquitin mediated proteolysis map04120

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms8.200
SRR2545915Juvenile tuber6.570
SRP108465SRR5643513five period of Gastrodia elata11.690
SRR5643514five period of Gastrodia elata18.940
SRR5643515five period of Gastrodia elata8.390
SRR5643524five period of Gastrodia elata17.700
SRR5643525five period of Gastrodia elata5.680
SRR5643528five period of Gastrodia elata3.550
SRR5643658five period of Gastrodia elata3.780
SRR5643659five period of Gastrodia elata2.320
SRR5643660five period of Gastrodia elata2.370
SRR5643661five period of Gastrodia elata4.430
SRR5643662five period of Gastrodia elata4.810
SRR5643663five period of Gastrodia elata5.020
SRR5643664five period of Gastrodia elata4.070
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_15.940
SRR6049655Rhizomagastrodiae_C368-T10_good_118.760
SRR6049656Rhizomagastrodiae_C368-T07_good_18.740
SRR6049657Rhizomagastrodiae_C368-T07_good_113.610
SRR6049658Rhizomagastrodiae_C368-T04_good_14.240
SRR6049659Rhizomagastrodiae_C368-T04_good_12.270
SRR6049660Rhizomagastrodiae_C368-T01_good_17.120
SRR6049661Rhizomagastrodiae_C368-T04_good_112.900
SRR6049662Rhizomagastrodiae_C368-T01_good_140.730
SRR6049663Rhizomagastrodiae_C368-T01_good_110.470
SRR6049664Rhizomagastrodiae_C368-T10_good_113.300
SRR6049665Rhizomagastrodiae_C368-T10_good_113.300
SRP279888GastroGastrodia elata tuber 2.00
JuvenJuvenile tuber6.28
Mother_GastroMother tuber of Gastrodia elata 7.71
Mother_JuvenMother tuber of Juvenile 8.12