Gene detail

Detail information of GWHGAAEX011326/evm.TU.scaffold_37.67

Functional Annotation

Database	Orthologs	Annotation
nr	gi\|743759474\|ref\|XP_010932456.1\|	PREDICTED: uncharacterized protein LOC105053111 [Elaeis guineensis]
trEMBL	tr\|A2ZMD0\|A2ZMD0_ORYSI	Putative uncharacterized protein {ECO:0000313\|EMBL:EAY83764.1}
TAIR	AT3G04605	transposable element gene

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000043	1650602	1653477	-

Transcript Sequence
>GWHTAAEX011326 CTTTACACTAGTGCCCATCGCCGCTGCGCTGCGGCTTGCACTCTTCTTCTCTCTTCCCCTTGGAATCGAAAGCCCTCCGCTTTGCAGTCTTTTGCCCCTCGCGCTATTTCGACTCTCTTCTTCGGCTCCAATGCCAAAAATAGGATCTTTCCGCTGCCCTTCTCCCGATTCAAATCGCAGGCCTTTATAAACGGCCCCTCCACCCGCCAAAAATCCATGGGCTATCCATTCTCCTGCCTTCGAGCCGCTCCAATCCCGCCCGTGTCCGTCTCTGATAGTGAATCTCCGCCTTCAAAAGGGGATGGTTCTCTTCGGTTATAAATGCGCAATCTTTGACGGTACGGACTTTCCAAATCTTCTTCAAGCGCTGTTGCCTTTGTTCTTGTTGATTCGAATTGATGAAATATGGCCAAGCATGAACTCATACTGGGCCAGAACCCGGACTTAGCACTTGGCCAGAGTCATGAGCTTGTTATGGGGCAGAACCATGGGTTAGGGATTAGTCATAGGCATGACCTTGAGCACAGTCTTGTTTTAGGGCACCATCATCATCATGATAGCAGTAGGCTTGTTTTAGGGCACCATCACCACCATGATTCTCATGCCGAAGAACAAGGCAGAGATCATGATTACAGCAGTGAATTGGCTCTTGGGCATGGCCACGAAGCACATCATCTTCTGGCCACACAGAACCATGAGCTAGTCATTTCTGACAATCATGAATTGGGGATTGCTGAGACGCACGACCTTGCCGTTGAGCAGCTCTCGGTAGAGCAGGGCCACGAGCTTGCACTCCATCCGGCTCTTGACCTCTCGCAGTCTCAACTGGTGGTGTCACCTGTGCTGCAGACTCGGGTAATAGTGAGCTGCAGTCATGAGCTCCATGTTGGGCAGGAGTTCCCCGATGTGAACAGCTGCAGAAGGGCCTTAAGAAGCGCAGCCATCGCGTGCCATTTCGAGATACAGACCGTTAAATCCGACAAAACTCGATTCACGGCAAAGTGCGCGGCGGATGGCTGCCCTTGGAGAATTCATGCTGCAAGGCTTCCCGGTGTTCCGACCTTCACCATTAGGACCATCAATGAGAATCATACCTGCATTGGGATCAATCATCTGGGGCATCAGCAAGCTTCTGTTCAGTGGGTTGCTAGTTCTGTGGAAGAGCGCCTCCGCGAAAATCCGCAGTACAAGCCGAAGGAGATCTTGGAAGAGATTCACCGGGTTCATGGAATCACCTTGTCTTACAAGCAGGCATGGAGGGGCAAGGAGAGAATCATGGCTGCTGTTCGAGGGTCGTTTGAGGAAGGATACCGGGTGCTTCCGCAATACTGTGAGCAGATTAAGAGGACTAACCCGGGAAGCATTGCACTTGTGTATGGAAATCAAGAAGATAACTGCTTCAAGCGCCTGTTTGTCTCATACTATGCTTCTATACATGGTTTTGTGCATGCGTGTCGTCCGCTGATTGGGCTGGATAGAACTCTTCTTAAAAGCAAATACCTTGGGACATTGCTCTTGGCTACTGGGTTTGATGGAGATGGTGCGCTTTTCCCCCTTGCTTTTGGTGTGGTGGACGAGGAGAGCGATGATAATTGGATTTGGTTCTTGTCGGAGCTGCACGCTCTGCTTGAGAACAATACGGAGAACATGCCGAGGCTCACAATCTTGTCTGATAGGCAAAAGGGTATTGTTGAAGGAGTGGATTTCAACTTCCCAACCGCGTTCCATGGTTTCTGCATGCATCATCTTAGTGAGGCCTTCCGAAAAGAGTTTCCGCATCATGCAAATCTTGTCAATCTCTTGTGGGAAGCTGCTCATGCGCTTACAGTGATTGATTTTGAAGCCAAGATACTGGAGATTGAAGAGATGTCCCAGGAAGCTGCTTACTGGATCAGAAGGATCCCTCCAAGACTGTGGGCAACAGCCTATTTCGAGGGAACGCGGTATGGACATCTAACTGCAAATATAGCAGAATCGCTCAACAGCTGGCTTTTGGAAGCATCTGGCCTCCCAATTGTTCAGATGATGGAGTGCATAAGGAGGCAGTTGATGACCTGGTTCAATGAGCGTCGAGAGATGAGCATACAGTGGTCCACCATCTTAGTTTCCTCAGCGGAGAGGCGTGTATCCGAAGCCATTGAGCGGGCTCAGGGATATCAAGTTGGAAGGGCTAATGAGGCGGAGTTTGAAGTCGTTTCTCCGCATGAGGGAACCAATATTGTGGACATTCGTAACAGATGTTGCCTTTGCCGCGGATGGCAACTCTATGGTTTGCCGTGTGCACATGGCGTGGCAGCACTCCACTTTTGCAGGCAGAATGTCCATCGGTATGCTGAGAGCTGTTTTACAGTGGCTACTTATCGCAAAACTTACTCTCAGACCATACATCCAATTCCAGATAAAAGCCTATGGAATGAACTGTTTGAAGGGGATCAACTGAAGCTGGAGATTGTTATAAACCCACCGAAGTCTCTTCGGCCGCCCGGAAGGCCGCGAAAAAAGAGGGTTCGTGCCGAGGACCGTGGCCGTGTGAAGCGAGTTGTTCACTGCAGCAGGTGCAATCAAACAGGTCATTTTCGAACTACATGTGCTGCACCAATTTGACATGTTGGAAATTTACTTTGCTTGTAGTGTTGTTTGGTTTGTTGTTGTTTTTTCTCTTCTGCCATGATGTGTTACCTCGTTTGTTTGATTTTTGGGGTATGCTTTTGAATTTGAGATCCTTCTGTCATATAATTTATCTTCAGCTTCATATAAAGCGTAGGTGTTGTAGAGAATAATGTTCTGTATGTATATTACGAGGATTTTGAGTGTATGAACTTGGTCCTGAAGTGATTTATTTTTGCTTCATTCATTCAGTTTTATGATGTTGTCGG

Network for GWHGAAEX011326

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module6

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03108.14	DBD_Tnp_Mut	158	222	3.80E-26
PF10551.8	MULE	354	450	2.00E-17
PF04434.16	SWIM	606	633	9.40E-05

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0008270	Molecular Function	zinc ion binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	22.760
SRP064423	SRR2545915	Juvenile tuber	20.210
SRP108465	SRR5643513	five period of Gastrodia elata	13.850
	SRR5643514	five period of Gastrodia elata	14.200
	SRR5643515	five period of Gastrodia elata	11.250
	SRR5643524	five period of Gastrodia elata	13.500
	SRR5643525	five period of Gastrodia elata	16.590
	SRR5643528	five period of Gastrodia elata	13.030
	SRR5643658	five period of Gastrodia elata	22.170
	SRR5643659	five period of Gastrodia elata	6.030
	SRR5643660	five period of Gastrodia elata	8.670
	SRR5643661	five period of Gastrodia elata	7.500
	SRR5643662	five period of Gastrodia elata	7.190
	SRR5643663	five period of Gastrodia elata	6.840
	SRR5643664	five period of Gastrodia elata	8.460
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	25.320
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	16.760
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	25.160
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	29.970
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	28.280
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	34.350
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	29.540
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	30.510
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	23.030
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	25.400
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	20.580
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	20.580
SRP279888	Gastro	Gastrodia elata tuber	7.73
	Juven	Juvenile tuber	10.02
	Mother_Gastro	Mother tuber of Gastrodia elata	10.73
	Mother_Juven	Mother tuber of Juvenile	8.16