Gene detail

Detail information of GWHGAAEX011340/evm.TU.scaffold_37.82

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG2660	1.00E-81	Locus-specific chromosome binding proteins
nr	gi\|743791582\|ref\|XP_010923475.1\|	1.21E-126	PREDICTED: E3 ubiquitin protein ligase DRIP2-like isoform X2 [Elaeis guineensis]
Swissprot	tr\|Q94AY3\|DRIP2_ARATH	4.00E-82	E3 ubiquitin protein ligase DRIP2
trEMBL	tr\|A0A068U597\|A0A068U597_COFCA	6.00E-110	Coffea canephora
TAIR	AT2G30580	1.00E-81	DREB2A-interacting protein 2

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000043	2188488	2202654	-

Transcript Sequence
>GWHTAAEX011340 GTTAAACTTATTATTCCCAGGCGGGCAACGCCGTCCGGCTCAGAAACAGGCAGCGCATGTTAACTTGAGAAAGCTCACGTCCTTTGTTGAAGCACGCTGAAAGCCTCTCCTTCCAGCGGTCTTCGTCGCTCCCGCTGTTCCATCGCTCGAGCTCGACCCTCGGTTTCTTCTTCGAAGCTCAACTTTACTGGATCCGCAGCTGGTATTACCTCTTTTTCAGATCTTCCTCGTCGAACCCTCCTTCTCCAGCGTCAATGCCGACTTCGAATCGTGCCCGAATCTTCTTCTTGCTGTCGCGCTTGGCCGGAGCGCTATAGTCGGCTAAACGGTGGCGAGTTTGCGATGTCGACCGCCGGGACGGCGGCCCTGTCGATGCTGGTCGCGAGGGTGAAGAGGGAGCTTCTTGCCGCGTGCATGACGTGCCCCCTTTGCCATAAGCTCCTCCGTGACGCCACCACTATCTCTGAGTGTCTGCATACCTTTTGCAGGAAATGCATTGTTGAGAAACTAACTGATGAAGAGACTGACTGCTGTCCTATATGCCAAATCGATTTGGGTTGCATTCCAGAAGAGAAGCTAAGGCCTGATCACAACCTACAAGATGTGAGATCAAAGATTTTTCCTTACAAGAGGAAAAAGGATGGTTCAGAAGTAATTCCATCTATTACATTACCTTTCAGAAGAAAGGAACGGTCACTATCTTCGTTAGTGGTTAATACCCCTAGAATGGTAACACCTGTAAGCTTGACTGGGAGGAGAACAAAAGTAGAAACTAGTAGGGCACGTGGACCGAGTCAAATTTTTGATGAATCTAAGAAGAAAGGATCCTGCAGTGATGATCTTGTGGATTCCAGCTCCACCGAGACTTTGAGCAAAACAGCTCACAGTAGAAGGCAGATTTCATCAAATGAAGAGACATCAAGTCATACAGTTCACCAGGATACCAAAAACAGTACGGATAGTTATAGATCTGAGATGTGGAAACCGTTGAACTGTCTTGTGGAAGTTGCCAATAGGACAAAGAATGTTAAACACAGTATGCAAACCCTTGCTTGTAAGGAAGAGAAAATGAATGGTACTGAGAATGATAGTCATATGCACAGAGCTAAGGTTCAAGATCATCCAAATAAATTAAAAATGCAAGATGGAAAAATTGATAATATTTCAACTTCATCAGCAATAACCAAATCTAGATTGCAAGGTGTTTGTCTGAAAAGGAAGGAACAATGGCCTTCAGCTCAAGCAGTGCTTGATGTTGCGGATGCTACATGTGAAAGGAGGATTTGTCCAGTCTGGCTTTCATTACTTTCCTCATCTGATCAAAAAGGAGTGTCTCCTTTGCCTCAGATATCAGCTTCTTTCCTAAGAATTAAGTCAGTATGCTTCATCTATTGTTGCTCATAATGAAAAGAATATTTTCTTTGTAAACTTTTTCTACTGTCCTTTTGGCTTTATTGCCTTTCATAATTGTGCATTGAAATTTTTGGGTGAAAATTTGTTGAGACGTTTAAATATGTGCAAATCCTGTATTGACAATTTATGGAACGCTAGACGCACAGGGATTTTTCTTTCCTACAAAGATTTGAAAACAAG

Network for GWHGAAEX011340

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13923.5	zf-C3HC4_2	27	67	1.10E-07

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	6.660
SRP064423	SRR2545915	Juvenile tuber	5.160
SRP108465	SRR5643513	five period of Gastrodia elata	5.420
	SRR5643514	five period of Gastrodia elata	4.960
	SRR5643515	five period of Gastrodia elata	7.000
	SRR5643524	five period of Gastrodia elata	4.530
	SRR5643525	five period of Gastrodia elata	6.810
	SRR5643528	five period of Gastrodia elata	7.580
	SRR5643658	five period of Gastrodia elata	5.670
	SRR5643659	five period of Gastrodia elata	5.770
	SRR5643660	five period of Gastrodia elata	6.910
	SRR5643661	five period of Gastrodia elata	7.090
	SRR5643662	five period of Gastrodia elata	7.820
	SRR5643663	five period of Gastrodia elata	5.430
	SRR5643664	five period of Gastrodia elata	5.070
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	4.650
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	5.550
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	5.480
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	4.680
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	5.090
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	4.890
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	4.240
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	6.450
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	7.990
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	6.520
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	5.940
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	5.940
SRP279888	Gastro	Gastrodia elata tuber	5.24
	Juven	Juvenile tuber	5.76
	Mother_Gastro	Mother tuber of Gastrodia elata	10.32
	Mother_Juven	Mother tuber of Juvenile	13.42