Detail information of GWHGAAEX011341/evm.TU.scaffold_37.83
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG2085 | 0 | Serine/threonine protein phosphatase 2A, regulatory subunit |
| nr | gi|743833680|ref|XP_010935325.1| | 0 | PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' beta isoform-like [Elaeis guineensis] |
| Swissprot | tr|O04375|2A5A_ARATH | 0 | Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' alpha isoform |
| trEMBL | tr|W1P023|W1P023_AMBTC | 0 | Uncharacterized protein {ECO:0000313|EMBL:ERN01278.1} |
| TAIR | AT5G03470 | 0 | Protein phosphatase 2A regulatory B subunit family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000043 | 2300364 | 2306996 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX011341
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01603.19 | B56 | 69 | 480 | 2.70E-185 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0007165 | Biological Process | signal transduction |
| GO:0019888 | Molecular Function | protein phosphatase regulator activity |
| GO:0000159 | Cellular Component | protein phosphatase type 2A complex |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 5.730 |
| SRR2545915 | Juvenile tuber | 6.300 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 12.470 |
| SRR5643514 | five period of Gastrodia elata | 12.070 | |
| SRR5643515 | five period of Gastrodia elata | 11.330 | |
| SRR5643524 | five period of Gastrodia elata | 12.360 | |
| SRR5643525 | five period of Gastrodia elata | 16.690 | |
| SRR5643528 | five period of Gastrodia elata | 23.590 | |
| SRR5643658 | five period of Gastrodia elata | 20.440 | |
| SRR5643659 | five period of Gastrodia elata | 13.630 | |
| SRR5643660 | five period of Gastrodia elata | 13.930 | |
| SRR5643661 | five period of Gastrodia elata | 13.110 | |
| SRR5643662 | five period of Gastrodia elata | 13.750 | |
| SRR5643663 | five period of Gastrodia elata | 11.440 | |
| SRR5643664 | five period of Gastrodia elata | 15.510 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 12.180 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 18.600 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 10.930 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 10.000 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 12.140 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 14.670 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 11.140 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 11.230 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 11.410 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 10.290 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 12.970 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 12.970 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 10.89 |
| Juven | Juvenile tuber | 14.38 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 36.05 | |
| Mother_Juven | Mother tuber of Juvenile | 20.91 |