Detail information of GWHGAAEX011343/evm.TU.scaffold_37.86


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|743792024|ref|XP_010923583.1|0PREDICTED: heparanase-like protein 2 isoform X2 [Elaeis guineensis]
Swissprottr|Q8L608|HPSE2_ARATH0Heparanase-like protein 2 (Precursor)
trEMBLtr|K3Z580|K3Z580_SETIT0Uncharacterized protein {ECO:0000313|EnsemblPlants:Si021698m}
TAIRAT5G078300glucuronidase 2

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000004323574362362722+
Transcript Sequence

Network for GWHGAAEX011343

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03662.13Glyco_hydro_79n253422.40E-154
Protein Sequence

Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGH79
Carbohydrate-Active enzymes FamilyGH79

KEGG pathway

KO Enzyme pathway mapID
K07964HPSE Metabolic pathways map01100
Glycosaminoglycan degradationmap00531

Gene Ontology

GO term OntologyName
GO:0016798Molecular Functionhydrolase activity, acting on glycosyl bonds
GO:0016020Cellular Componentmembrane

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms39.430
SRR2545915Juvenile tuber34.970
SRP108465SRR5643513five period of Gastrodia elata28.270
SRR5643514five period of Gastrodia elata33.030
SRR5643515five period of Gastrodia elata29.250
SRR5643524five period of Gastrodia elata30.940
SRR5643525five period of Gastrodia elata53.430
SRR5643528five period of Gastrodia elata45.810
SRR5643658five period of Gastrodia elata69.250
SRR5643659five period of Gastrodia elata35.350
SRR5643660five period of Gastrodia elata36.040
SRR5643661five period of Gastrodia elata33.700
SRR5643662five period of Gastrodia elata39.510
SRR5643663five period of Gastrodia elata51.730
SRR5643664five period of Gastrodia elata46.650
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_122.530
SRR6049655Rhizomagastrodiae_C368-T10_good_123.730
SRR6049656Rhizomagastrodiae_C368-T07_good_125.550
SRR6049657Rhizomagastrodiae_C368-T07_good_124.390
SRR6049658Rhizomagastrodiae_C368-T04_good_124.970
SRR6049659Rhizomagastrodiae_C368-T04_good_129.190
SRR6049660Rhizomagastrodiae_C368-T01_good_123.560
SRR6049661Rhizomagastrodiae_C368-T04_good_127.300
SRR6049662Rhizomagastrodiae_C368-T01_good_127.230
SRR6049663Rhizomagastrodiae_C368-T01_good_124.900
SRR6049664Rhizomagastrodiae_C368-T10_good_123.830
SRR6049665Rhizomagastrodiae_C368-T10_good_123.830
SRP279888GastroGastrodia elata tuber 50.69
JuvenJuvenile tuber19.17
Mother_GastroMother tuber of Gastrodia elata 33.40
Mother_JuvenMother tuber of Juvenile 15.37