Detail information of GWHGAAEX011344/evm.TU.scaffold_37.87


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|392402696|ref|YP_006439308.1|4.00E-21putative transcriptional regulator, Crp/Fnr family [Turneriella parva DSM 21527]
KOGKOG04980K+-channel ERG and related proteins, contain PAS/PAC sensor domain
nrgi|695057128|ref|XP_009416822.1|0PREDICTED: cyclic nucleotide-gated ion channel 2-like [Musa acuminata subsp. malaccensis]
Swissprottr|O65718|CNGC2_ARATH0Cyclic nucleotide-gated ion channel 2
trEMBLtr|B1PJP3|B1PJP3_SANAU0Putative cyclic nucleotide-gated cation channel {ECO:0000313|EMBL:ACA58352.1}
TAIRAT5G154100Cyclic nucleotide-regulated ion channel family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000004323641732367660-
Transcript Sequence

Network for GWHGAAEX011344

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module3

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00520.30Ion_trans803422.10E-10
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K05391CNGC Plant-pathogen interaction map04626

Gene Ontology

GO term OntologyName
GO:0006811Biological Procession transport
GO:0055085Biological Processtransmembrane transport
GO:0005216Molecular Functionion channel activity
GO:0016020Cellular Componentmembrane

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms16.620
SRR2545915Juvenile tuber18.240
SRP108465SRR5643513five period of Gastrodia elata10.110
SRR5643514five period of Gastrodia elata16.010
SRR5643515five period of Gastrodia elata11.900
SRR5643524five period of Gastrodia elata17.170
SRR5643525five period of Gastrodia elata5.620
SRR5643528five period of Gastrodia elata3.050
SRR5643658five period of Gastrodia elata2.960
SRR5643659five period of Gastrodia elata27.560
SRR5643660five period of Gastrodia elata27.810
SRR5643661five period of Gastrodia elata31.850
SRR5643662five period of Gastrodia elata18.600
SRR5643663five period of Gastrodia elata18.170
SRR5643664five period of Gastrodia elata19.560
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_19.180
SRR6049655Rhizomagastrodiae_C368-T10_good_16.400
SRR6049656Rhizomagastrodiae_C368-T07_good_18.250
SRR6049657Rhizomagastrodiae_C368-T07_good_110.910
SRR6049658Rhizomagastrodiae_C368-T04_good_111.830
SRR6049659Rhizomagastrodiae_C368-T04_good_110.510
SRR6049660Rhizomagastrodiae_C368-T01_good_110.590
SRR6049661Rhizomagastrodiae_C368-T04_good_18.060
SRR6049662Rhizomagastrodiae_C368-T01_good_17.190
SRR6049663Rhizomagastrodiae_C368-T01_good_17.790
SRR6049664Rhizomagastrodiae_C368-T10_good_17.990
SRR6049665Rhizomagastrodiae_C368-T10_good_17.990
SRP279888GastroGastrodia elata tuber 19.54
JuvenJuvenile tuber14.90
Mother_GastroMother tuber of Gastrodia elata 2.52
Mother_JuvenMother tuber of Juvenile 7.17