Detail information of GWHGAAEX011346/evm.TU.scaffold_37.89
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|13541573|ref|NP_111261.1| | 6.00E-10 | DNA-directed RNA polymerase subunit M [Thermoplasma volcanium GSS1] |
| KOG | KOG2907 | 6.00E-21 | RNA polymerase I transcription factor TFIIS, subunit A12.2/RPA12 |
| nr | gi|695033251|ref|XP_009404133.1| | 4.90E-69 | PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like [Musa acuminata subsp. malaccensis] |
| trEMBL | tr|M0T620|M0T620_MUSAM | 2.00E-69 | DNA-directed RNA polymerase subunit {ECO:0000256|PIRNR:PIRNR005586} |
| TAIR | SPCC1259.03 | 6.00E-21 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000043 | 2411132 | 2413982 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX011346
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01096.17 | TFIIS_C | 85 | 121 | 2.60E-14 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K03000 | RPA12, ZNRD1 | RNA polymerase | map03020 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006351 | Biological Process | transcription, DNA-templated |
| GO:0006379 | Biological Process | mRNA cleavage |
| GO:0003676 | Molecular Function | nucleic acid binding |
| GO:0008270 | Molecular Function | zinc ion binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 33.920 |
| SRR2545915 | Juvenile tuber | 37.630 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 12.640 |
| SRR5643514 | five period of Gastrodia elata | 16.420 | |
| SRR5643515 | five period of Gastrodia elata | 15.300 | |
| SRR5643524 | five period of Gastrodia elata | 15.570 | |
| SRR5643525 | five period of Gastrodia elata | 16.070 | |
| SRR5643528 | five period of Gastrodia elata | 18.790 | |
| SRR5643658 | five period of Gastrodia elata | 16.700 | |
| SRR5643659 | five period of Gastrodia elata | 26.460 | |
| SRR5643660 | five period of Gastrodia elata | 29.250 | |
| SRR5643661 | five period of Gastrodia elata | 28.640 | |
| SRR5643662 | five period of Gastrodia elata | 31.160 | |
| SRR5643663 | five period of Gastrodia elata | 25.700 | |
| SRR5643664 | five period of Gastrodia elata | 28.060 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 15.600 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 7.470 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 19.720 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 23.780 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 28.840 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 29.280 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 23.100 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 28.070 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 13.850 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 19.710 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 13.380 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 13.380 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 36.60 |
| Juven | Juvenile tuber | 14.40 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 14.99 | |
| Mother_Juven | Mother tuber of Juvenile | 8.62 |