Detail information of GWHGAAEX011347/evm.TU.scaffold_37.90
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|743791985|ref|XP_010923573.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At3g29230 [Elaeis guineensis] |
| Swissprot | tr|Q9LS72|PP261_ARATH | 0 | Pentatricopeptide repeat-containing protein At3g29230 |
| trEMBL | tr|A0A061EFY1|A0A061EFY1_THECC | 0 | Tetratricopeptide repeat (TPR)-like superfamily protein, putative {ECO:0000313|EMBL:EOY03563.1} |
| TAIR | AT3G29230 | 0 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000043 | 2418184 | 2420522 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX011347
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 84 | 109 | 1.3 |
| PF01535.19 | PPR | 154 | 178 | 0.00043 |
| PF01535.19 | PPR | 182 | 208 | 1.20E-06 |
| PF01535.19 | PPR | 213 | 242 | 2.20E-07 |
| PF01535.19 | PPR | 244 | 272 | 0.00018 |
| PF01535.19 | PPR | 275 | 303 | 0.0015 |
| PF01535.19 | PPR | 348 | 373 | 0.0011 |
| PF13041.5 | PPR_2 | 374 | 420 | 1.20E-09 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.680 |
| SRR2545915 | Juvenile tuber | 0.540 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.750 |
| SRR5643514 | five period of Gastrodia elata | 1.550 | |
| SRR5643515 | five period of Gastrodia elata | 2.160 | |
| SRR5643524 | five period of Gastrodia elata | 1.840 | |
| SRR5643525 | five period of Gastrodia elata | 0.790 | |
| SRR5643528 | five period of Gastrodia elata | 0.730 | |
| SRR5643658 | five period of Gastrodia elata | 0.330 | |
| SRR5643659 | five period of Gastrodia elata | 3.060 | |
| SRR5643660 | five period of Gastrodia elata | 3.270 | |
| SRR5643661 | five period of Gastrodia elata | 2.820 | |
| SRR5643662 | five period of Gastrodia elata | 4.140 | |
| SRR5643663 | five period of Gastrodia elata | 2.770 | |
| SRR5643664 | five period of Gastrodia elata | 3.360 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 2.260 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 2.830 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 2.050 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.330 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.040 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.100 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 1.430 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.580 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 2.450 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 2.250 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 3.210 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 3.210 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.75 |
| Juven | Juvenile tuber | 1.95 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.91 | |
| Mother_Juven | Mother tuber of Juvenile | 0.67 |