Gene detail

Detail information of GWHGAAEX011348/evm.TU.scaffold_37.91

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|698431265\|ref\|XP_009794188.1\|	1.39E-172	PREDICTED: probable WRKY transcription factor 4 [Nicotiana sylvestris]
Swissprot	tr\|Q9XI90\|WRKY4_ARATH	9.00E-141	Probable WRKY transcription factor 4
trEMBL	tr\|A0A068TVV4\|A0A068TVV4_COFCA	2.00E-169	Coffea canephora
TAIR	AT1G13960	3.00E-140	WRKY DNA-binding protein 4

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000043	2436461	2457117	+

Transcript Sequence
>GWHTAAEX011348 CTCATTTTGGAGGCAATTTATAATTTAATTTATTTATCCCTTCTCACCTCTTCCTGCTCGCTTCCTTCTTCCTCCCATCAAAGTTTCCACCCTGCCTTCTTCCTAGAAACCCTCGCAAACCAACCCCTAAAATACTTCCATCCAGATTAATCTGAGCCTTTCTGATAAAGAATTTTGGGAATCGACTGAATTTTCCTTTTCCCTGTTCGATTGCATTGCTCCATGTCGGAGAACGGCGGAGTTGCGGCATCGTCGGAGGCGGAGATTAGCCGGCCGTCGATATCGATTCCGGCGAGGAGGACAGTGGAAAGCATCTTCCGTGGAGGGCCGGCAGAGGCGAGTCCAGGGCCGATGACGCTGGCATCGAGCTTCTTTGATCCTGAATCCGAGTGCCGGTCCTTCTCCCAGCTCCTTGCTGGAGCCATGGCCTCTTCTCCGCCTCCAGCCGCAACAGCGGCTGACGATGCGCGAGGCGGAGTTGGAAGGGGAGGAACTAATTTGAATTTAGGGCATAACCGGCCGATGAATTTGCTGGTGTCTCAACCGCCGTTCTTTACCGTTCCGGCTGGATTCAGCCCGGGCGGCTTGCTAGATTCTCCGGCGGTGTTTGCCTCTAATTTGGGGCACCTTGGAATGTCACATCAGCATGCATTAGCACAAGTAACTTCCCAGCCTGCCCATTCACATACTCAAATGCACAGCCAGGCAGAATTTCCATCTTCTCTTTCAGCATCTTCCTTGATACAGCCAGCCGCCACCTTTAACATGGAGGCTTCCCAGCCCCCACGGACGGCTGTTTCTGGGAAGAATACTCATAATACAGAATCTTCTTTCACTTCTCCTTTTGATCAAAGACCTCAGCATGCCCCTTTCGTTGTTGATAAACCTGCTGATGATGGGTATAATTGGCGTAAATATGGGCAAAAGCAAGTTAAAGGCTGTGAATTTCCAAGGAGCTACTACAAATGCACCCACCTAAAGTGCCCAGTTAAGAAGAAGGTTGAACGCTCCCTCGATGGTCAAGTGACGGAGATAATCTATAAAGGACAACACAATCACGAGCGGCCTATATCTAATAGGCGACTAAAAGATGGTTCAGTTGAATTAAATGGGAATATTGATCCCAATTATTATGAATCACTACAACAGGATGACCCTTCAAACTTCAACAGATCAAATAATGGTACGATCGGCCTATCTAAAAAGGAGAGAGAATCTGGGCATGGTGTATCTGAGCAGCTATCGGCTTCAAGTGATGATGAGGAATTGGGTGATGAAGAAGCAGAAGATGGCGAACCTGAACATAAAAGAAGAAGTTTGGAAACTCGGGTGATAGAGTCGTCTTCTCATAGGACGGTAACCGAACCAAGGATCATTCTGCAAACAACGAGTGAAGTTGATCTCTTGGATGATGGCTACAGATGGCGCAAATATGGGCAAAAGGTTGTGAAGGGAAATCCTCATCCAAGGAGTTATTACAAGTGCACCAGTGCAGGGTGCAATGTTCGGAAGCATGTTGAAAGGGCTTCAACTGACCCAAAAGCCGTTGTAACGACTTACGAGGGGAAGCATAATCACGATGTTCCTGCAGCTCGGAACAGCAGCCATAATACCTCCAGCACTGGTGCTTCTTCTTATAATAGAAGCATGTCTACTTCTCATGACATCTTATCAAGTATTCAGAATAGCCAAGCAAGATCAGAGCAAAGAAACAATGTGTATCGGCCTGTTGCCGTTCTTCGGCTAAAAGGAGAACAAAAAATGACATAAGAATTTTCAGCCTTGTTTTGTCAAATATACATGGTTTGGAAACAAAATATAAGTGCACAAAAGTGATCCATTTTTAAAGTGGATTAATTGGCTTGACTGTAAGTTTGCAGGAAAACCACACAACTTGTGTAAATTATTAGCTTATGCTGTTTTGATCGATGATTCTGCTCGTCTTTTATTTATTTTTTTGTTCTGTTAGCAGGCCTTGTTATAGTCAGAAAGTTAATAATTCCTTTTGATACATGTCAATGCACCATTTTGCTGTTATTTCAATTTTGTTTTATATGCTGCATGTCCAGATTTCCTATCTTCCTTTTGCTTTCTGTTCTATGTTATAGATTATATTTTGAATCAGTTATGAATGAACTTTGCAATAGAAAATAGTTGATTATAACTTGTTTCTTTAAAAGTTATTTTGATTGCATTTGCAGCGTCTTAAACTGTTATAATTTGCAAATTTCTTAAGCTATCTGATTATCAGCACACACCAAGTGTTTGGAGCCGTAATTAATCACTGTGTTCTTATCACCCACACAGGCAAATATGTATTCTTGATTTTTCTATGTAACTACATTTCCATTAGTTCATAAACTGCCATTTATTCTGCCATATTTTGTTGAGCTTTTCCTCATGAAAATCCATCAGAAGGCGACGCAAAGATATTGAGCATTCAAGTATGGTTGACCTAGCTTCCATGCCTCCGTTATCACTTCTGTGGGCTTGTGTGAAGGAGCAGTATCCTTGGAAAAAGAAGTGTAGCCAAAGAGAAGAATGTGCTCTTCTCTAGGAAAAGGGTAAAACATGCGCGAAGCATTCTTCTTAAATCAGAAAGGAAAAAAGGAGAACATATGCTATATATTATTTGTGTACTGGTAAATAATTTATGGGGTTATTTGGGTCTGTAGTAGTTTGGATGCAAAATAATTATAATCTCACTAATGTATGAATTGGCCCAAAGATATAAATTGACCCATGTCGGCTCCCACATCAACACTGGTCAGTTCTTGCCAGCTTATGCCCAACCTTTGTGCCATTTACAGCTTGGCCATTATCATGTGAACATCCTGCCTAGTCAAGACTCCAGTCATGAATTTTCCCTGCCAACGCTCGCCCTCATTGGCCCTCCCTCGCCGTCCTCAGTTTGCCACATGCAGGCAACGCTTCCATGAAAGCACTAGGGCCTTGTCGGCCTTCGGCTTGGCTTGTTGATCGTCGTGGGAACCTCGTCAACTTGCTGGCATAGTGCAGCTCTACTGGATCGGCACGAGAAAAACTTATTAAGAAATTTTGCATTTTTAATTTTACTTTACATCTAAAAAAGCATCAAAATCTAATAATCTTGTAAAACTTGCAAATATCTAAAATCCGTTTGCACTAATAATTTGATTTTCAGTTATACTATAATTTAGTCATCTCTGAGATAGAATTATAATAAACCCAACACCTTCTAAAAATAAGTAATGATTGCCATTTTAAGAAGATTGGAAGAGATATAATCTTGGAGAATTGTTATACAGTGTAAATAAGAACATTAACTATACTTGGTGATGAAATACTTCTATAGTCATCAAGGACATGACTACGAGCACTAAAAGTAGATGTATATGCAATAATTGTTATAGAAAAAATGAGGATATCTTTC

Network for GWHGAAEX011348

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03106.14	WRKY	224	280	6.20E-25
PF03106.14	WRKY	396	453	4.40E-26

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	WRKY

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	11.170
SRP064423	SRR2545915	Juvenile tuber	9.190
SRP108465	SRR5643513	five period of Gastrodia elata	15.610
	SRR5643514	five period of Gastrodia elata	13.490
	SRR5643515	five period of Gastrodia elata	16.650
	SRR5643524	five period of Gastrodia elata	16.120
	SRR5643525	five period of Gastrodia elata	9.500
	SRR5643528	five period of Gastrodia elata	16.030
	SRR5643658	five period of Gastrodia elata	8.260
	SRR5643659	five period of Gastrodia elata	11.270
	SRR5643660	five period of Gastrodia elata	11.140
	SRR5643661	five period of Gastrodia elata	12.100
	SRR5643662	five period of Gastrodia elata	9.270
	SRR5643663	five period of Gastrodia elata	6.200
	SRR5643664	five period of Gastrodia elata	9.310
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	13.360
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	15.330
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	13.770
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	13.740
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	18.650
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	20.190
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	16.370
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	16.410
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	12.210
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	15.670
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	16.180
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	16.180
SRP279888	Gastro	Gastrodia elata tuber	7.10
	Juven	Juvenile tuber	15.45
	Mother_Gastro	Mother tuber of Gastrodia elata	29.22
	Mother_Juven	Mother tuber of Juvenile	25.69