Detail information of GWHGAAEX011350/evm.TU.scaffold_37.95
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|695023681|ref|XP_009399026.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At5g39710 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q9LFF1|PP281_ARATH | 2.00E-71 | Pentatricopeptide repeat-containing protein At3g53700, chloroplastic (Precursor) |
| trEMBL | tr|M0SV28|M0SV28_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr5P02490_001} |
| TAIR | AT1G30290 | 0 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000043 | 2481857 | 2486187 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX011350
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 296 | 324 | 0.0022 |
| PF13041.5 | PPR_2 | 326 | 375 | 1.70E-12 |
| PF01535.19 | PPR | 399 | 426 | 0.057 |
| PF12854.6 | PPR_1 | 463 | 495 | 4.90E-08 |
| PF13041.5 | PPR_2 | 502 | 550 | 2.50E-19 |
| PF01535.19 | PPR | 575 | 605 | 0.043 |
| PF01535.19 | PPR | 614 | 640 | 0.011 |
| PF13041.5 | PPR_2 | 643 | 691 | 3.90E-13 |
| PF12854.6 | PPR_1 | 710 | 740 | 7.40E-07 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 6.180 |
| SRR2545915 | Juvenile tuber | 4.330 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 3.970 |
| SRR5643514 | five period of Gastrodia elata | 3.490 | |
| SRR5643515 | five period of Gastrodia elata | 3.240 | |
| SRR5643524 | five period of Gastrodia elata | 3.120 | |
| SRR5643525 | five period of Gastrodia elata | 3.440 | |
| SRR5643528 | five period of Gastrodia elata | 3.920 | |
| SRR5643658 | five period of Gastrodia elata | 2.840 | |
| SRR5643659 | five period of Gastrodia elata | 4.980 | |
| SRR5643660 | five period of Gastrodia elata | 5.620 | |
| SRR5643661 | five period of Gastrodia elata | 5.350 | |
| SRR5643662 | five period of Gastrodia elata | 5.320 | |
| SRR5643663 | five period of Gastrodia elata | 5.870 | |
| SRR5643664 | five period of Gastrodia elata | 4.550 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 5.780 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 4.980 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 5.670 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 5.770 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 5.230 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 6.070 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 6.490 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 6.390 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 6.450 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 7.170 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 4.420 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 4.420 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 5.12 |
| Juven | Juvenile tuber | 3.99 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 4.53 | |
| Mother_Juven | Mother tuber of Juvenile | 2.80 |