Detail information of GWHGAAEX011355/evm.TU.scaffold_37.104


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG41973.00E-11FOG: PPR repeat
nrgi|695059815|ref|XP_009418280.1|4.32E-27PREDICTED: pentatricopeptide repeat-containing protein At1g55890, mitochondrial-like [Musa acuminata subsp. malaccensis]
Swissprottr|Q9SI78|PPR93_ARATH1.00E-11Pentatricopeptide repeat-containing protein At1g62720
trEMBLtr|M0U226|M0U226_MUSAM7.00E-28Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr9P20670_001}
TAIRAT1G627203.00E-11Pentatricopeptide repeat (PPR-like) superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000004326340922634469+
Transcript Sequence

Network for GWHGAAEX011355

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF12854.6PPR_160933.20E-08
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms3.880
SRR2545915Juvenile tuber2.790
SRP108465SRR5643513five period of Gastrodia elata0.000
SRR5643514five period of Gastrodia elata0.000
SRR5643515five period of Gastrodia elata0.000
SRR5643524five period of Gastrodia elata0.000
SRR5643525five period of Gastrodia elata0.000
SRR5643528five period of Gastrodia elata0.000
SRR5643658five period of Gastrodia elata0.000
SRR5643659five period of Gastrodia elata0.000
SRR5643660five period of Gastrodia elata0.000
SRR5643661five period of Gastrodia elata0.000
SRR5643662five period of Gastrodia elata0.000
SRR5643663five period of Gastrodia elata0.000
SRR5643664five period of Gastrodia elata0.000
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_10.000
SRR6049655Rhizomagastrodiae_C368-T10_good_10.000
SRR6049656Rhizomagastrodiae_C368-T07_good_10.470
SRR6049657Rhizomagastrodiae_C368-T07_good_10.000
SRR6049658Rhizomagastrodiae_C368-T04_good_11.950
SRR6049659Rhizomagastrodiae_C368-T04_good_10.570
SRR6049660Rhizomagastrodiae_C368-T01_good_11.310
SRR6049661Rhizomagastrodiae_C368-T04_good_10.540
SRR6049662Rhizomagastrodiae_C368-T01_good_14.050
SRR6049663Rhizomagastrodiae_C368-T01_good_10.000
SRR6049664Rhizomagastrodiae_C368-T10_good_10.000
SRR6049665Rhizomagastrodiae_C368-T10_good_10.000
SRP279888GastroGastrodia elata tuber 0.00
JuvenJuvenile tuber0.00
Mother_GastroMother tuber of Gastrodia elata 0.00
Mother_JuvenMother tuber of Juvenile 0.00