Detail information of GWHGAAEX011356/evm.TU.scaffold_37.105


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|384207675|ref|YP_005593395.1|2.00E-34hypothetical protein Bint_0181 [Brachyspira intermedia PWS/A]
KOGKOG11242.00E-142FOG: TPR repeat
nrgi|743760985|ref|XP_010939929.1|1.08E-171PREDICTED: suppressor of RPS4-RLD 1 [Elaeis guineensis]
Swissprottr|F4JS25|SRFR1_ARATH1.00E-150Suppressor of RPS4-RLD 1 {ECO:0000303|PubMed:15469494}
trEMBLtr|A0A061DGX4|A0A061DGX4_THECC2.00E-166Tetratricopeptide repeat-like superfamily protein isoform 3 {ECO:0000313|EMBL:EOX91610.1}
TAIRAT4G374602.00E-142Tetratricopeptide repeat (TPR)-like superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000004326348902712323-
Transcript Sequence

Network for GWHGAAEX011356

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13432.5TPR_163470.0064
PF00515.27TPR_159902.40E-07
PF12895.6ANAPC31772499.10E-07
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms20.150
SRR2545915Juvenile tuber20.850
SRP108465SRR5643513five period of Gastrodia elata10.430
SRR5643514five period of Gastrodia elata13.340
SRR5643515five period of Gastrodia elata8.990
SRR5643524five period of Gastrodia elata14.990
SRR5643525five period of Gastrodia elata15.210
SRR5643528five period of Gastrodia elata15.100
SRR5643658five period of Gastrodia elata18.310
SRR5643659five period of Gastrodia elata11.560
SRR5643660five period of Gastrodia elata11.160
SRR5643661five period of Gastrodia elata10.290
SRR5643662five period of Gastrodia elata9.300
SRR5643663five period of Gastrodia elata11.770
SRR5643664five period of Gastrodia elata10.230
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_19.050
SRR6049655Rhizomagastrodiae_C368-T10_good_16.860
SRR6049656Rhizomagastrodiae_C368-T07_good_110.280
SRR6049657Rhizomagastrodiae_C368-T07_good_113.210
SRR6049658Rhizomagastrodiae_C368-T04_good_112.020
SRR6049659Rhizomagastrodiae_C368-T04_good_112.610
SRR6049660Rhizomagastrodiae_C368-T01_good_19.040
SRR6049661Rhizomagastrodiae_C368-T04_good_110.970
SRR6049662Rhizomagastrodiae_C368-T01_good_18.170
SRR6049663Rhizomagastrodiae_C368-T01_good_17.890
SRR6049664Rhizomagastrodiae_C368-T10_good_111.040
SRR6049665Rhizomagastrodiae_C368-T10_good_111.040
SRP279888GastroGastrodia elata tuber 17.45
JuvenJuvenile tuber27.92
Mother_GastroMother tuber of Gastrodia elata 14.54
Mother_JuvenMother tuber of Juvenile 30.95