Detail information of GWHGAAEX011359/evm.TU.scaffold_37.109
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|49474683|ref|YP_032725.1| | 3.00E-50 | elongation factor P [Bartonella quintana str. Toulouse] |
| nr | gi|672189024|ref|XP_008813733.1| | 3.60E-110 | PREDICTED: uncharacterized protein LOC103724297 isoform X1 [Phoenix dactylifera] |
| trEMBL | tr|Q84M44|Q84M44_ORYSJ | 9.00E-104 | Putative translation elongation factor P {ECO:0000313|EMBL:AAP21425.1} |
| TAIR | AT4G26310 | 1.00E-46 | elongation factor P (EF-P) family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000043 | 2786943 | 2869782 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX011359
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08207.11 | EFP_N | 69 | 123 | 1.10E-17 |
| PF01132.19 | EFP | 133 | 184 | 5.60E-15 |
| PF09285.10 | Elong-fact-P_C | 194 | 248 | 6.70E-17 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006414 | Biological Process | translational elongation |
| GO:0043043 | Biological Process | peptide biosynthetic process |
| GO:0003746 | Molecular Function | translation elongation factor activity |
| GO:0005737 | Cellular Component | cytoplasm |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 44.230 |
| SRR2545915 | Juvenile tuber | 36.300 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 14.870 |
| SRR5643514 | five period of Gastrodia elata | 15.250 | |
| SRR5643515 | five period of Gastrodia elata | 13.780 | |
| SRR5643524 | five period of Gastrodia elata | 14.820 | |
| SRR5643525 | five period of Gastrodia elata | 6.830 | |
| SRR5643528 | five period of Gastrodia elata | 8.250 | |
| SRR5643658 | five period of Gastrodia elata | 4.980 | |
| SRR5643659 | five period of Gastrodia elata | 33.490 | |
| SRR5643660 | five period of Gastrodia elata | 17.700 | |
| SRR5643661 | five period of Gastrodia elata | 18.070 | |
| SRR5643662 | five period of Gastrodia elata | 32.370 | |
| SRR5643663 | five period of Gastrodia elata | 30.720 | |
| SRR5643664 | five period of Gastrodia elata | 33.400 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 13.840 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 17.310 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 14.660 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 11.540 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 8.770 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 7.660 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 10.430 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 12.000 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 14.110 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 13.960 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 16.520 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 16.520 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 26.27 |
| Juven | Juvenile tuber | 32.25 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 16.10 | |
| Mother_Juven | Mother tuber of Juvenile | 14.40 |