Gene detail

Detail information of GWHGAAEX011370/evm.TU.scaffold_37.124

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|385809862\|ref\|YP_005846258.1\|	1.00E-62	glucose/sorbosone dehydrogenase [Ignavibacterium album JCM 16511]
nr	gi\|743759830\|ref\|XP_010934011.1\|	0	PREDICTED: HIPL1 protein-like [Elaeis guineensis]
Swissprot	tr\|Q9SSG3\|HIPL1_ARATH	0	HIPL1 protein (Precursor)
trEMBL	tr\|M0TGW6\|M0TGW6_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr7P12280_001}
TAIR	AT1G74790	0	catalytics

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000043	3160519	3186564	-

Transcript Sequence
>GWHTAAEX011370 TTGGCTGTCAAACTTGATGAACAAACAGCCTTTAAATATTTACCCCTTCTGCTTCTAGCTCCTCTTCAAAGAGTGAGAGCTGAGCGGATGGATTCCCTTCTTCCATTGTTTCTCTTCAAATCCCTAGTTTTGCTTCTGCTTTTACGCCGTTCTTCCGCGTTCCCGCTGTGTACAAACTCTCGAGCCCCGCTAACCCTAACGGCCCCATTGACCTTCTGCTCTTATGTGGGAAGCAGCTGCTGCAATGCCACAGATGATTCTGCGCTGCAGGAGCAGTTCGATTCCATGAATATCTCTGATTCGACCTGTGGATCTCTCGTGAAGTCTATTATCTGCACAAAATGTAATCCATATTCAGATGATCTCTTCACTATTGAACCAAACATTAGAATGGTTCCTGTTTTGTGCAACTCAACTGCATCTGCTAGTTCCACGCAATCGAGTAAAAATGCTATTGGAAACTTCTGCATGCAGGTCTGGGATTCTTGCAAAGATGTATCGATTAGGAACTCTCTTTTTGCTTCCTCTTTGCAGGGCAGCTCTGGACAACCAGTTTCATCTTCCAAAATTTCAGATCTCTGGCAATCGGAAACAGATTTTTGCAATGCATTTGGAGGGTCAGCTGATAGTAAGTCGGTTTGTTTCAATGGTCAGTCCGTTTCGTTTAATAGTTCAACAGATTCAGCCCCTCCCAAAGGTGTCTGCCTTGAGAAACTTGGAAATGGATCATACCTTAGTATGGTGCCTCATCCAGATGGATCAAATCGTGTCTTCTTGTCAAATCAAGCTGGCCAGATTTGGCTAGCAACAGTTCCGGATCAAGGATCGGGAGGAACTTTGAATTTTAACGAATCCGATACTTTTCTTGATATAACTGACTTGGTTTATTATGATTCTGCTTTTGGAGTAATGAGTCTGGCATTTCACCCAAACTTTACCAAAAATGGGCGTTTCTTTGTTTCATATAATTGTGATAAAACACAAACAGCGAGCTGCTCTGGAAGGTGCTCGTGCAACTCGGACATAGGTTGTGATCCTTCAAAACTTGGTTTGGACGATAATGCTCAGCCTTGCAGATATCATAGTGTTATTTCAGAGTTCAGTGTCAATGGCTCCTCATCAACACCTTCTGAGGCAACATCTGCTGGCCCCTCTGAAGTAAGAAGGATTTTCACTATGGGGCTTCCGTACTCAGAACATCATGGAGGGCAAATACTTTTTGGACCTGAAGATGGGTATTTGTACTTTATGATGGGTGATGGTGGGAATGATGGTGATCCATTCAATTTTGCTCAGAATAAAAAATCTTTATTGGGTAAAATTATGCGGTTTGATGTGAATAACATACCAAGTTCAAGTGAGATAAACGATCTTGGTCTTTGGGGAAACTATTCAATTCCAAAAGGAAACCCTTTTGCTGATGATAGTCAACTGCAGGCTGAGATTTGGGCTTTGGGTCTTAGAAATCCATGGCGCTGCAGCTTCGACTCACAGAGGCCGTCTTACTTCTTTTGTGCAGATGTTGGACAGGAATCATTTGAGGAAGTGGACTTGATATCAAAGGCAGGGAATTATGGATGGCGTGTCTACGAGGGTTTTAACCTTTATCATCCTAAGATGTCTCCAGGAGGAAATACCACTCTAGCCTCCATAAATCCTATTTTTCCTATCATGGGATATAATCACTCCTCTGTGAACACAAATGTAGGATCTGCTTCAATTACTGGTGGCTATGTCTATAGAGCAAATGCTGATCCATGCTTGTATGGAAGGTATTTGTATGCGGACCTGTATGGCTTATCAATGTGGGCAGGAATCGAGAATCCCGAGAACAGTGGGAATTACAACAGTACATTTTTGACATTTGGCTGTGCTAGAGATACTCCCATTGCTTGTGATGCTGTTGAAGGCAGCCACTTCCCGTCTCTCGGCCTCATCTACTCCTTCGCTGAGGATAACAAAAGGGACGTTTACATTCTAGCAAGCAAAGGTGTTTACAGGATAGTTCGCTCCAGCCGGTGCAATTACTCTTGCCCTCTGGAAAGACATATAGATAATGAGAGTCCACCCACAGGCTCTTCTCCTTCCTCTTCAACTTGTCTTTTTGAAACCCTTCAGCTGAATTATGGGCTTCTAATCAGCTTAGTCATTCTGTGGGTTCTTCTTAGCTTTGGAGATGAGTGGTAGGGTTTTTTTGCTGTCTATTTGTGATACAAACTGATCGCTTATGATTTTGGGATGTTGATTTTCTTGTAAATATTGTATGGCCTTTTTGAATTTTGGGGTTATTACTGTCAACGAAAATTTTTCATATTTGCATATTTGGTATCATGTAATGATGGGATTTATATAGTTGTTTTGTGAATGAACATTCCAATGTTGATATAGAGTTTAATGAGAGATATAAGTGATGCAT

Network for GWHGAAEX011370

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module2

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07995.10	GSDH	218	515	5.20E-22

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003824	Molecular Function	catalytic activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	27.880
SRP064423	SRR2545915	Juvenile tuber	16.240
SRP108465	SRR5643513	five period of Gastrodia elata	14.910
	SRR5643514	five period of Gastrodia elata	16.800
	SRR5643515	five period of Gastrodia elata	15.270
	SRR5643524	five period of Gastrodia elata	18.790
	SRR5643525	five period of Gastrodia elata	9.900
	SRR5643528	five period of Gastrodia elata	6.950
	SRR5643658	five period of Gastrodia elata	8.330
	SRR5643659	five period of Gastrodia elata	5.470
	SRR5643660	five period of Gastrodia elata	7.390
	SRR5643661	five period of Gastrodia elata	5.250
	SRR5643662	five period of Gastrodia elata	3.570
	SRR5643663	five period of Gastrodia elata	3.530
	SRR5643664	five period of Gastrodia elata	3.800
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	16.830
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	12.810
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	18.640
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	14.790
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	21.050
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	26.450
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	21.530
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	24.090
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	21.650
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	23.470
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	19.770
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	19.770
SRP279888	Gastro	Gastrodia elata tuber	5.03
	Juven	Juvenile tuber	9.59
	Mother_Gastro	Mother tuber of Gastrodia elata	10.26
	Mother_Juven	Mother tuber of Juvenile	9.67