Detail information of GWHGAAEX011378/evm.TU.scaffold_37.134


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|326318607|ref|YP_004236279.1|2.00E-15major facilitator superfamily protein [Acidovorax avenae subsp. avenae ATCC 19860]
KOGKOG02551.00E-138Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily)
nrgi|475618993|gb|EMT30622.1|2.03E-160Solute carrier family 22 member 3 [Aegilops tauschii]
Swissprottr|Q9SA38|OCT3_ARATH4.00E-139Organic cation/carnitine transporter 3
trEMBLtr|M8CSP3|M8CSP3_AEGTA8.00E-161Solute carrier family 22 member 3 {ECO:0000313|EMBL:EMT30622.1}
TAIRAT1G163901.00E-138organic cation/carnitine transporter 3

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000004336223563641734-
Transcript Sequence

Network for GWHGAAEX011378

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module6

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00083.23Sugar_tr984742.20E-20
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0055085Biological Processtransmembrane transport
GO:0022857Molecular Functiontransmembrane transporter activity
GO:0016021Cellular Componentintegral component of membrane

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms2.010
SRR2545915Juvenile tuber0.150
SRP108465SRR5643513five period of Gastrodia elata6.120
SRR5643514five period of Gastrodia elata1.750
SRR5643515five period of Gastrodia elata2.060
SRR5643524five period of Gastrodia elata1.870
SRR5643525five period of Gastrodia elata0.180
SRR5643528five period of Gastrodia elata0.000
SRR5643658five period of Gastrodia elata0.210
SRR5643659five period of Gastrodia elata0.900
SRR5643660five period of Gastrodia elata1.110
SRR5643661five period of Gastrodia elata0.250
SRR5643662five period of Gastrodia elata0.120
SRR5643663five period of Gastrodia elata0.220
SRR5643664five period of Gastrodia elata0.000
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_131.250
SRR6049655Rhizomagastrodiae_C368-T10_good_133.750
SRR6049656Rhizomagastrodiae_C368-T07_good_135.560
SRR6049657Rhizomagastrodiae_C368-T07_good_132.150
SRR6049658Rhizomagastrodiae_C368-T04_good_142.300
SRR6049659Rhizomagastrodiae_C368-T04_good_144.970
SRR6049660Rhizomagastrodiae_C368-T01_good_155.930
SRR6049661Rhizomagastrodiae_C368-T04_good_145.370
SRR6049662Rhizomagastrodiae_C368-T01_good_124.630
SRR6049663Rhizomagastrodiae_C368-T01_good_129.810
SRR6049664Rhizomagastrodiae_C368-T10_good_132.040
SRR6049665Rhizomagastrodiae_C368-T10_good_132.040
SRP279888GastroGastrodia elata tuber 0.22
JuvenJuvenile tuber3.52
Mother_GastroMother tuber of Gastrodia elata 0.78
Mother_JuvenMother tuber of Juvenile 0.54