Gene detail

Detail information of GWHGAAEX011384/evm.TU.scaffold_37.143

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743758793\|ref\|XP_010928834.1\|	0	PREDICTED: uncharacterized protein LOC105050483 [Elaeis guineensis]
Swissprot	tr\|Q58G01\|LHWL3_ARATH	2.00E-21	Transcription factor bHLH155
trEMBL	tr\|A0A067LF64\|A0A067LF64_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP45873.1}
TAIR	AT5G53900	7.00E-157	Serine/threonine-protein kinase WNK (With No Lysine)-related

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000043	4005099	4008740	-

Transcript Sequence
>GWHTAAEX011384 GTCCATGGATAAGTTGGTAATTTACCAAAGAACTACTTTTTAATCCAGCAGCAAGCAAGCAAGCAAGCAAGGCAATCCCAATTCTCCCCTCTTTCTTCCTCCCCTCAGTCGAGAATGGCAGGGATAGAGAGAAATAGAGGGCGATAAGGAAAAGAAGGAAGAAAAGAATGGCAGGCTCCGGAAGCGGAGGCGAGAGCAGGAGCAAAGAAGCCGTAGGGATGATGGCTCTTCACGAGGCCTTGCGCAACGTCTGCTTCAACTCCGACTGGACTTATTCTGTCTTCTGGACCATTCGCCCTCGCCCGAGATGCAGGGGAGGCAACGGCTGCAAGGTCGGGGATGACAGCGGAAGCCTGATGCTTATGTGGGAAGATGGCTTCTGCCGCACAAGGATCGCCGACTGCCTCGATGAGATGGACGGCCAGGATCCCGTCAGAAAGGCCTTCAGCAAGATGTCCATCCAGCTCTACAACTACGGAGAAGGGCTGATGGGCAAAGTGGCCTCTGATAAGTGTCACAAATGGGTCTTCAAAGAACCTTCTGAATGCGAACCCAACATATCTAACTACTGGCAGAGTTCCTTTGATTCGCTTCCTCCAGAATGGACTGATCAGTTCGCATCAGGCATTCAGACCATTGCTGTGATCCAAGCCGGCCATGGACTTCTCCAGCTTGGCTCCTGCAAGATTATACCAGAAGACCTCCACTTTGTTCTAAGGATGAGACACATGTTCGAGTCCATTGGATACCAATCAGGCTTCTTCCTCTCCCAGCTCTTCTCTTCGACCCGAAGCCCGACGCCCTCACCACCTCCCCCTCCCAAGCAAACCCCGGCTCGACTGGCCCAGCCGATTTTCAACTGGGCCCACTCCCCCTTCCCCCCCGCTCCGCCATCTCAAGCCTTTCACCCTTCTGCGGCACGACTCTTCCCTCATTCCGACGACGACGTGATCGCCGCCTCCGACCATGATGCGGACCTCAAATGGCCCAGCGGGCTCTCCTTCTTCAATGCCCTTACTGGCCGCACTGACGATGCAAAACTTCTCTTCGGCCCCGACAGGATCGGAAGCAAGTACCAGCACCAGCAACAGCAATACTTGATGGCGGGAAAGAGCGGCGGTGCCGAAGACGAAGTGAAGGCTGAGATGAGCGGAAGCGGGGGCAACGGAGCGGACGATTACTTGAGCCTGGAAAGCCGTTCTGGCAAGGCGAGAAAGTTTAAGAGGAGTTTCACTCTGCCGGCTAGGATGAGCTCATCTTCGTCGTCTGCCGCTCAAGGGATGGAGCTTAATAGGGGGTCTGAAGCTGGGATATACTCTGATATCATGGAAACTTTTTTGGAGTGATTTGTGTGTTTGAACTTGGTGTTATCTAGTTCTTTTCAGAATTGCCTTAGGAGGTGTAGTTGGTGTCTAATTGTTGATTAGTGTGAGCATTGTATGCTTAATTGTTTTCTTACTAGGTTTGGTGAGGTGTCCCTTATTCTTATTACTGATTGTTAGTAGTTGGTGTTAAGAAAGTTATGCAAATTTAACAAATGTTTTATAGGCTCGCATGCTAGTGACTCCATATTGCATTTTGAAATAAAGCTAATGTGCTAGTTCGATATCTTTTAGTTTAGATTTACTTAGCAAGTCTGAACTTGCTTAGTTTAGTAAACATTGTTATATCCTATATCGGCTTAGTGGTATGGAGATGTATTAACGC

Network for GWHGAAEX011384

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14215.5	bHLH-MYC_N	21	74	3.90E-09
PF14215.5	bHLH-MYC_N	83	189	7.40E-18

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	5.340
SRP064423	SRR2545915	Juvenile tuber	11.510
SRP108465	SRR5643513	five period of Gastrodia elata	4.290
	SRR5643514	five period of Gastrodia elata	2.150
	SRR5643515	five period of Gastrodia elata	4.220
	SRR5643524	five period of Gastrodia elata	3.680
	SRR5643525	five period of Gastrodia elata	4.450
	SRR5643528	five period of Gastrodia elata	5.610
	SRR5643658	five period of Gastrodia elata	3.010
	SRR5643659	five period of Gastrodia elata	9.760
	SRR5643660	five period of Gastrodia elata	4.830
	SRR5643661	five period of Gastrodia elata	12.190
	SRR5643662	five period of Gastrodia elata	8.350
	SRR5643663	five period of Gastrodia elata	8.010
	SRR5643664	five period of Gastrodia elata	3.670
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	3.270
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	5.160
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	5.300
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	4.150
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	6.140
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	4.920
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	5.690
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	5.900
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	4.550
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	5.600
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	7.750
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	7.750
SRP279888	Gastro	Gastrodia elata tuber	6.75
	Juven	Juvenile tuber	2.67
	Mother_Gastro	Mother tuber of Gastrodia elata	29.47
	Mother_Juven	Mother tuber of Juvenile	14.61