Detail information of GWHGAAEX011390/evm.TU.scaffold_37.150
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|672173681|ref|XP_008806974.1| | 0 | PREDICTED: putative pentatricopeptide repeat-containing protein At5g52630 [Phoenix dactylifera] |
| Swissprot | tr|Q9SVP7|PP307_ARATH | 1.00E-169 | Pentatricopeptide repeat-containing protein At4g13650 |
| trEMBL | tr|A0A061DTD9|A0A061DTD9_THECC | 0 | Tetratricopeptide repeat-like superfamily protein {ECO:0000313|EMBL:EOX96064.1} |
| TAIR | AT3G61170 | 0 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000043 | 4530424 | 4533385 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX011390
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 21 | 47 | 0.00043 |
| PF01535.19 | PPR | 51 | 73 | 0.00044 |
| PF01535.19 | PPR | 84 | 112 | 2.00E-05 |
| PF01535.19 | PPR | 288 | 318 | 0.098 |
| PF01535.19 | PPR | 361 | 384 | 0.14 |
| PF01535.19 | PPR | 462 | 484 | 0.00054 |
| PF01535.19 | PPR | 490 | 519 | 1.70E-05 |
| PF01535.19 | PPR | 563 | 585 | 0.24 |
| PF01535.19 | PPR | 627 | 657 | 0.3 |
| PF14432.5 | DYW_deaminase | 661 | 784 | 1.30E-33 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
| GO:0008270 | Molecular Function | zinc ion binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.170 |
| SRR2545915 | Juvenile tuber | 0.960 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 3.360 |
| SRR5643514 | five period of Gastrodia elata | 2.320 | |
| SRR5643515 | five period of Gastrodia elata | 3.850 | |
| SRR5643524 | five period of Gastrodia elata | 2.550 | |
| SRR5643525 | five period of Gastrodia elata | 1.030 | |
| SRR5643528 | five period of Gastrodia elata | 0.990 | |
| SRR5643658 | five period of Gastrodia elata | 0.520 | |
| SRR5643659 | five period of Gastrodia elata | 6.670 | |
| SRR5643660 | five period of Gastrodia elata | 4.260 | |
| SRR5643661 | five period of Gastrodia elata | 7.730 | |
| SRR5643662 | five period of Gastrodia elata | 6.480 | |
| SRR5643663 | five period of Gastrodia elata | 4.540 | |
| SRR5643664 | five period of Gastrodia elata | 7.780 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 3.080 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 2.580 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 3.000 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 2.170 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 3.060 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 2.410 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 3.630 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 3.250 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 4.730 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 4.790 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 4.180 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 4.180 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 5.50 |
| Juven | Juvenile tuber | 2.17 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1.27 | |
| Mother_Juven | Mother tuber of Juvenile | 0.59 |