Detail information of GWHGAAEX011391/evm.TU.scaffold_37.151


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|428777697|ref|YP_007169484.1|5.00E-6430S ribosomal protein S5 [Halothece sp. PCC 7418]
KOGKOG08773.00E-10840S ribosomal protein S2/30S ribosomal protein S5
nrgi|672172722|ref|XP_008806465.1|2.96E-121PREDICTED: 30S ribosomal protein S5, chloroplastic [Phoenix dactylifera]
Swissprottr|P93014|RR5_ARATH9.00E-10930S ribosomal protein S5, chloroplastic (Precursor)
trEMBLtr|W1PSF1|W1PSF1_AMBTC6.00E-119Uncharacterized protein {ECO:0000313|EMBL:ERN10973.1}
TAIRAT2G338003.00E-108Ribosomal protein S5 family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000004345336654554741-
Transcript Sequence

Network for GWHGAAEX011391

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00333.19Ribosomal_S51442081.10E-22
PF03719.14Ribosomal_S5_C2212913.30E-25
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02988RP-S5, MRPS5, rpsE Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412Biological Processtranslation
GO:0003723Molecular FunctionRNA binding
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0015935Cellular Componentsmall ribosomal subunit
GO:0005840Cellular Componentribosome

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms7.030
SRR2545915Juvenile tuber6.110
SRP108465SRR5643513five period of Gastrodia elata13.640
SRR5643514five period of Gastrodia elata13.130
SRR5643515five period of Gastrodia elata14.030
SRR5643524five period of Gastrodia elata15.130
SRR5643525five period of Gastrodia elata11.960
SRR5643528five period of Gastrodia elata9.350
SRR5643658five period of Gastrodia elata8.070
SRR5643659five period of Gastrodia elata16.870
SRR5643660five period of Gastrodia elata16.320
SRR5643661five period of Gastrodia elata19.360
SRR5643662five period of Gastrodia elata19.540
SRR5643663five period of Gastrodia elata18.760
SRR5643664five period of Gastrodia elata18.240
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_112.360
SRR6049655Rhizomagastrodiae_C368-T10_good_17.200
SRR6049656Rhizomagastrodiae_C368-T07_good_111.850
SRR6049657Rhizomagastrodiae_C368-T07_good_111.040
SRR6049658Rhizomagastrodiae_C368-T04_good_19.350
SRR6049659Rhizomagastrodiae_C368-T04_good_17.240
SRR6049660Rhizomagastrodiae_C368-T01_good_19.420
SRR6049661Rhizomagastrodiae_C368-T04_good_19.610
SRR6049662Rhizomagastrodiae_C368-T01_good_112.920
SRR6049663Rhizomagastrodiae_C368-T01_good_111.360
SRR6049664Rhizomagastrodiae_C368-T10_good_119.080
SRR6049665Rhizomagastrodiae_C368-T10_good_119.080
SRP279888GastroGastrodia elata tuber 21.40
JuvenJuvenile tuber20.01
Mother_GastroMother tuber of Gastrodia elata 7.06
Mother_JuvenMother tuber of Juvenile 9.49