Gene detail

Detail information of GWHGAAEX011392/evm.TU.scaffold_37.152

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|17227525\|ref\|NP_484073.1\|	6.00E-13	hypothetical protein alr0029 [Nostoc sp. PCC 7120]
KOG	KOG0650	0	WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis
nr	gi\|743772393\|ref\|XP_010916504.1\|	0	PREDICTED: ribosome biogenesis protein BOP1 homolog isoform X1 [Elaeis guineensis]
Swissprot	tr\|A8ID74\|BOP1_CHLRE	0	Ribosome biogenesis protein BOP1 homolog {ECO:0000255\|HAMAP-Rule:MF_03027}
trEMBL	tr\|M1CBT7\|M1CBT7_SOLTU	0	Ribosome biogenesis protein BOP1 homolog {ECO:0000256\|HAMAP-Rule:MF_03027}
TAIR	AT2G40360	0	Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000043	4624198	4692452	-

Transcript Sequence
>GWHTAAEX011392 CTCTTTCGCCTTTCGACACTTCTCCCGCGCGCCCTACTTCTCTATTCATCCATTGTATTTCTTACTTCGGCTGCTTTTGAGTTCCCCATCCTTCTTCACTCAGTTCAATTATTTATATTCGGTGGTTATTTTCTTTGAACTTCGTTGTTCCTCCCCAAGATCTCCCCCCTCCCCTAAATCCATACAAAAAATCCATTGAAAAGCGTCGCATGCTTCACTAAGTTTCTGAGACTGTTACTAAACCTGCATCGATGGCGAAATTTAAGATTGGCAACAAAAAAGTGAAGGTTGCCATTACGAAAGCTAAGAAAAAGAAGGTTAATGCTGATCCAGATGACATACATGGCATAGAAACTGAACCTCATTCTCTCGCAAATGACAAATCGGTCTTTGATACGCCCAAAGTTTCTCAATCTTCCGATGCTGATGTTTCGTTTGTTATTAGTGGGGATGAGGACAATGATTTGTTTCATTCAGCTGATGAGAGTGATTCCTCCGAGGATGAGGTGACTCCTAGAAATACTATTGGTGATGTCCCATTAGAGTGGTACAAGGATGAGGAACATATTGGGTATGACATAGCTGGTAGGAAGATCAGGAAGCATGCCCGGAAGGACAAGATAGATTCTTTCCTAGCTGGAATAGATGATTCAAAAAATTGGAGGAAATTTTTTGATGAATACAATGATGAAGAGGTAGAATTGACAAAGAAGGAGATAAAGGTTATCAGACGCTTGTTAAAGGGAAGCACCCCTCATGCTGAAGTGGATCCTTATGCGCCATATATTGATTGGTTTGAGTGGGAGGACAAAGGACATCCGCTTTCTAATGCACCAGAACCCAAGAGGCGGTTCATTCCTTCCAAGTGGGAACACAAAAAGGTTGTTCGATATATTAGGGCGATTCGCAATGGTTGGATTAGGTTTGACAAACCAAAGGAGGAGCCCCGCCATTATTTATTGTGGGGTGATGATTCTACTACGGCTGAAACTAAGAGACAAGGTTTGAAATATATACCTGCACCAAAACCAAAGCTTGCAGGTCATGAGGAATCATATAATCCATCTATAGAGTACATCCCTACTCAAGAGGAGATCAACTCCTACCAACTGATGTTTGAGGAAGATAGGCCCAAGTTCATTCCCAGAAGATATGAGTCTCTCAGGAATGTGCCAGCTTATGAGAATGCTCTTAAAGAAGGCTTTGAACGTTGCTTGGATTTATACTTGTGTCCTAGAACAAGAAAAAAAAGAATTAATATTGATCCTGAATCTTTGAAACCAAAATTACCTAGTAGGAAAGATCTGAAGCCTTATCCATCAAAATGTTATCTTGAGTATTTAGGTCACAGTGGTCCTGTGAAGTCAATCTCAGTTGAAATTTCAGGGCAGTGGTTAGCTTCTGGTTCGATCGATGGAACAGTACGTCTTTGGGAAGTTGAAACTGGTCGCTGCCTTAAAGTTTGGAATATTGGTGAACCTGTCTATCATGTTACATGGAATCCTTTGCCTCAGCTTCCTATTTTGGCAGTGTCAGCGGGGCATGATGTGCTTCTTTTGGACACAGGGCTTGGAGATGCTGAAGAGCAGCATAAGATTACTGAGCTTCTCCATAAATATGAGACAACATCAACAGGAGATAACGATCTTGTGAATTGGGTAAGAGAAGAAATGCACGGTGGCATTCGGCTAAGGCATAGTAAGGATGTGACCACAGTAGAGTGGCATCGGAAAGGAGACTATTTCACAACAGTCATGCCGAAAGGCGAGACAAAAGCTGTGCTGTTGCACCAACTTTCCAAAAGGCAAACAAATAATCCTTTCAAGAAGCTGCGGGGACTTGCAGTTTCAGCTGTTTTTCATCCTTCACGATCAATTTTCTTCATCTCTACAAAGAATCACATCCGTGTTTATGATCTGCTGAAATCAAAGCTAATTAATAAACTTGAGACTGGATTACAGGAAATATCATCAGTTGCAGTTCATCCTGGAGGTGACAATCTTATTGTTGGAAGCAAGGAGGGCAAGATGTGTTGGTTTGACATGGATCTCTCTTCTCGACCCTACAAAATTTTGAAGACTCACCCAAAGGATATAACTAATGTTGCCTTTCATCGTTCATATCCTTTGTTCGCTTCAAGCTCTGAAGACTGCACAGCCTATGTGTTTCATGGAATGGTGTATTCAGATCTTAATCAGAATCCTCTGATTGTCCCTTTGGAAATTCTTCGTGGTCATGCGCTTACAAAATATGGTGGAGTTATGGACTGCAAATTTCACCCAAGGCAGCCTTGGTTGTTCACCGCTGGTGCTGATTCTGTTATCAAGCTTTTTTGCCATTGACTACTTTTTCAAGGGGCTGAAGTGAAAGAAAAAAAGGCATCCAGACAAAGAAATTGGGGAAAATATTTATAGTGAAATATATTTTTATGCAGGCTTATTTCCATGCTCAAAATTTTACTGTTATGTAGGCTTTTTAATTCTCTTAATTTTATAGGCATTTTTTTATTTATTCAGGTGAAGAAAAATATATATGTATGCACTTTTTTATTGAATGAATTATTGTTTTTTTGTGTTTGGCTTTCAAAAGGATTTCTATTTTACATATTTATCCTTTTTTTTGCCATATTTAAAGTTTTTA

Network for GWHGAAEX011392

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module3

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08145.11	BOP1NT	100	356	2.00E-101
PF00400.31	WD40	358	394	1.20E-06
PF00400.31	WD40	604	639	0.0014
PF00400.31	WD40	655	694	0.0051

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0042254	Biological Process	ribosome biogenesis
GO:0006364	Biological Process	rRNA processing
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	40.480
SRP064423	SRR2545915	Juvenile tuber	23.240
SRP108465	SRR5643513	five period of Gastrodia elata	51.400
	SRR5643514	five period of Gastrodia elata	45.060
	SRR5643515	five period of Gastrodia elata	51.050
	SRR5643524	five period of Gastrodia elata	40.990
	SRR5643525	five period of Gastrodia elata	21.880
	SRR5643528	five period of Gastrodia elata	15.500
	SRR5643658	five period of Gastrodia elata	15.420
	SRR5643659	five period of Gastrodia elata	129.150
	SRR5643660	five period of Gastrodia elata	101.650
	SRR5643661	five period of Gastrodia elata	167.390
	SRR5643662	five period of Gastrodia elata	237.990
	SRR5643663	five period of Gastrodia elata	174.860
	SRR5643664	five period of Gastrodia elata	253.240
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	75.300
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	44.410
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	54.070
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	81.180
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	50.200
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	59.190
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	64.030
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	46.020
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	46.770
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	50.740
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	52.020
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	52.020
SRP279888	Gastro	Gastrodia elata tuber	86.81
	Juven	Juvenile tuber	74.04
	Mother_Gastro	Mother tuber of Gastrodia elata	21.77
	Mother_Juven	Mother tuber of Juvenile	42.09