Gene detail

Detail information of GWHGAAEX011400/evm.TU.scaffold_37.166

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG0955	2.00E-65	PHD finger protein BR140/LIN-49
nr	gi\|672176699\|ref\|XP_008808422.1\|	3.81E-169	PREDICTED: uncharacterized protein LOC103720485 isoform X1 [Phoenix dactylifera]
Swissprot	tr\|Q93YS6\|GTE9_ARATH	2.00E-12	Transcription factor GTE9
trEMBL	tr\|M0TZG6\|M0TZG6_MUSAM	9.00E-105	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr9P11570_001}
trEMBL	tr\|M0TZG6\|M0TZG6_MUSAM	1.00E-27	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr9P11570_001}
TAIR	AT1G20670	2.00E-65	DNA-binding bromodomain-containing protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000043	5299638	5313379	+

Transcript Sequence
>GWHTAAEX011400 GTGCTGTAGCTTTCAGCGTGAGGAGAGAGAAAGCAAGGGCTGATTGGTAAGAGGAGAGAGAGAGCGAAGAGTCAGTAAGCCCTGTGAAGAGAGAGAATGATGGCGAAGCAAGCGGCGACCAAGATTCGTCTTCGGAACAAGCACAGCGGCCGTCCTCCTCGCCCAGATTCCCCTATTCTTTACGATCTGCCTCCTACTCCTGCTATCGTGACCCGTCGCCGGCGAAGTCTCCGTCCAAGGAGGTGGCGGAAGCTCGCCGCCGACGGCGTTTGCGGGTTCGACCATCAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGTAGAAGAGGAAGAAGAAGAGGAGAAGATCAACCTAAAGAAGCTGCGCTTGGTCGTCAAACTCCCTTGCTCCCCTGCTCGGCGGCCTCGCCGGGCAGCAGCTGCTTTCGCTTTGGCCTCGTCGTCATCATCCTCTCCTTCTCCCTCGCCGGCCTCGTCTTCCTCTTCTTCTTCGTATGCGGACGAGGAAGAGATTGGAGATGACGAAGATGAAGCAGAGACCATCAAGCCCCCCAAAAAGCGGCGGATCGACCGCCGGGGCAACGCCATGTCTAGATCCGTCGGTCACGAGGAAAGCAAAATAAATGCATCCGGAAGATGCTCGGGCGATGGGCCTGGTAATTTGCCAGCTTTCTGGAACGGAACGCCAATGCCCGAGAAAAAGGAGCTTGAATTAATTCTGCATAAGCTCCAGAAGAAGGATACTTATGGTGCATTTGCAGAGCCTGTGGATCAGGAAGAGCTTCCTGATTACCATGATGTCATTGAGCATCCAATGGATTTTGGAACTATAAGAAAAAAATTGAACAGGGGTGCTTATCGTTTCTTTGAACAGTTTGAGGATGATGTTTTGCTAATTTGCAACAATGCAATGCAATATAACGCGCCAGACACAATTTACTTCAGACAAGCATGCGCAATACAAGACATGGCAAGAAAACAATTTCAGAATGTCAGAGTAAATGTAAAGCAGACAGAAACTGTGCAAACTGAGCTGAGGTCAGAAGAAAAAGCCAGATTAATCTCCATTGAGAAAAAGGCACCACGTAACCTGCAGGTATCAAGGATTCAGTGCAAATCAATTGCTGAACCGCTTGTATCTGACATCTCCTCTGGTGCTACTCTTGCCTCTGCTGGCGATACCTCTACTGGACTGAGCACAGTTAATGACAATGAGAAGCTTGGTGCTGTTAATGGGCTTCTAGATGCCAGTTCTTTTCTGGATGAGTGCAAACAAGAAAAGCCTGTCACTGCCAATGGGTTTCTAGATGCTAGCTCTTCTCATAGGGAGAATAAACAAGAGAAATCAGTTGCTGTTAATGAGCTTTTACATGCTGATTCATCTCCGACGGGAAGCAAACAAGAGAAATCTATCGCTGTTAGTGGATTTTTGGAATCTAGTTCTTCTCTTGGGGAGAGCAAACATGACAAAGGGGATGACTTCTCAGTTAAGAACTCTCCCTCCAAGCTGATGCGTAAAATGGCTCTTGTTGATGAAAACAGACGGGCGACTTATAACACAGCTCATGAGCCAAAGCCTTTAGTTGAATCTGATTTGATAGTCAATTTACTTGAAGATGAACAGAAGCAGCTGGTTCCTGTAGGACTTGATGCAGAGCAATCATACGCCAGGAGTCTTGCTCGATTTACCGCATCCCTTGGACCTGCAGCTTGGGAAATAGTGTCCAGAAAAATCGAAAAAACTTTGCCTTCCGGGATTAAATTTGGACCTGGCTGGGTAGGGGAATATGAGCCACTTCTAACTCCTTACCTTTCTTTTGAAAAAAGCAAACCAAAGCATACCAACAGTTCAGTTTCAAGAACTGTGACCAATGACAAGGCTGCCGAAATGAAGTCAAAGAGCGGGCAGACCACCAGTTCCAGTAACATGGAGTTTGGCATCAAGAAACAATTGACCCCTAAAGCCTCGAGAAAATCCCCTAATTCTGTTAAGAGTACCTCGAATGTTAATTCAGGAGAGCAAAAACCGAGGTTTCTTGGTGCTGCCAGCACAGCCCTTAACTCTGGCAAGAGTACCTCCTGTGATAATTCAGGAGAGAAAAAGCCGAGGTTTTTTGGTGTTGGCAGCACCGTCCAATCGAAAATTAACGGAAATGCAGGACAGAAACAGAGCACTGATTCCAAAAACACAAGTGTCCGTGTCAATAATTCTACAAATAACCGGAACATGTCTATGGCTTCTGTTCGCGTTAAAGAAGAAATCCCATGTGAGGAGGAGGTTACTGTGAGAAGGCAAAATGTGATTCATACCAGTAATTTGACACAAGCAAGCACCCAAATGATTTCCCACCAGCAGAATGCTCAACCCGTTGCAAATTTTCCAAATTCATTTCCAAATGTTTTGCCACAAGTTCGTCCAAGCTTACCTGGAATTTTCCCAAGCGACAAAGGTCACCTGCAAACTGAAACCCAGAAAGTATTTCTTGCAGCATCGTCTAAAAACATTGGCAATACTCCAGAAATCGGTGTCAGAGGCTCAAGCAATGTGGCCAGAGTCAGTAATTCTTTTCCATTCATTCCAAATAATCAAACTGGTGCAAACTGCAGCATTAGCCATGGTAATAATTATGATCAGGCTTCCAGTGATCCCTTCAAGTTAGTAAGTTTTCCGGGAAAGACCAGCAATCAGCCAAATCTATTGAGCAACGGGACGAACAATCATTCAGAACAATCTTTTTCGATAGCCTCGCCTCTAAGCAAGGAAAATTATAGCCCAACAGCATCCGCCTCTGCAAGAGCATGGATGTCAGTTGGATCCTCCTGCCAGTGGAAATCAGTCAGCAGCAAAAACCCTTCAGAAAAGCCGACCTTATCATCCCCTTTCTGCAACCCTACTTGGAAGCCCCCTTCTTCTGCCTCCCCATTTAACGGATATTCTATGCTGCGGCCCACGAGTTTACCCTTACAAGTGGAAGCATCTCAAGTCAAAAATAGAGGCCTCGTTATTTTTCCGCAGTTGATTTCCACAGATCAATCGAAATATCCGAGCCATTCTTCCTGGCAGGGGTCCAGCCCGCAGCCTCAGAAGAGCAAGCAGAGAGATAATCTTCCTCCAGACCTCAATATTGGGTACCAGGCTCCAGCTTCTCCAATACAGCCTTCTTCTACTCTGGCTATGGACTCTCAGCAGCCTGACTTGGCCTTGCAGCTGTAA

Network for GWHGAAEX011400

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00439.24	Bromodomain	208	287	2.90E-23

Protein Sequence

>GWHPAAEX011400
MMAKQAATKIRLRNKHSGRPPRPDSPILYDLPPTPAIVTRRRRSLRPRRWRKLAADGVCGFDHQEEEEEEEEEEEEVEEEEEEEKINLKKLRLVVKLPCSPARRPRRAAAAFALASSSSSSPSPSPASSSSSSSYADEEEIGDDEDEAETIKPPKKRRIDRRGNAMSRSVGHEESKINASGRCSGDGPGNLPAFWNGTPMPEKKELELILHKLQKKDTYGAFAEPVDQEELPDYHDVIEHPMDFGTIRKKLNRGAYRFFEQFEDDVLLICNNAMQYNAPDTIYFRQACAIQDMARKQFQNVRVNVKQTETVQTELRSEEKARLISIEKKAPRNLQVSRIQCKSIAEPLVSDISSGATLASAGDTSTGLSTVNDNEKLGAVNGLLDASSFLDECKQEKPVTANGFLDASSSHRENKQEKSVAVNELLHADSSPTGSKQEKSIAVSGFLESSSSLGESKHDKGDDFSVKNSPSKLMRKMALVDENRRATYNTAHEPKPLVESDLIVNLLEDEQKQLVPVGLDAEQSYARSLARFTASLGPAAWEIVSRKIEKTLPSGIKFGPGWVGEYEPLLTPYLSFEKSKPKHTNSSVSRTVTNDKAAEMKSKSGQTTSSSNMEFGIKKQLTPKASRKSPNSVKSTSNVNSGEQKPRFLGAASTALNSGKSTSCDNSGEKKPRFFGVGSTVQSKINGNAGQKQSTDSKNTSVRVNNSTNNRNMSMASVRVKEEIPCEEEVTVRRQNVIHTSNLTQASTQMISHQQNAQPVANFPNSFPNVLPQVRPSLPGIFPSDKGHLQTETQKVFLAASSKNIGNTPEIGVRGSSNVARVSNSFPFIPNNQTGANCSISHGNNYDQASSDPFKLVSFPGKTSNQPNLLSNGTNNHSEQSFSIASPLSKENYSPTASASARAWMSVGSSCQWKSVSSKNPSEKPTLSSPFCNPTWKPPSSASPFNGYSMLRPTSLPLQVEASQVKNRGLVIFPQLISTDQSKYPSHSSWQGSSPQPQKSKQRDNLPPDLNIGYQAPASPIQPSSTLAMDSQQPDLALQL

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	44.440
SRP064423	SRR2545915	Juvenile tuber	35.440
SRP108465	SRR5643513	five period of Gastrodia elata	25.540
	SRR5643514	five period of Gastrodia elata	22.230
	SRR5643515	five period of Gastrodia elata	28.070
	SRR5643524	five period of Gastrodia elata	24.400
	SRR5643525	five period of Gastrodia elata	24.450
	SRR5643528	five period of Gastrodia elata	38.330
	SRR5643658	five period of Gastrodia elata	22.820
	SRR5643659	five period of Gastrodia elata	24.430
	SRR5643660	five period of Gastrodia elata	19.910
	SRR5643661	five period of Gastrodia elata	23.260
	SRR5643662	five period of Gastrodia elata	24.340
	SRR5643663	five period of Gastrodia elata	23.000
	SRR5643664	five period of Gastrodia elata	22.600
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	31.770
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	38.000
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	24.400
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	36.330
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	35.470
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	48.860
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	34.800
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	34.310
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	27.620
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	30.810
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	21.070
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	21.070
SRP279888	Gastro	Gastrodia elata tuber	23.85
	Juven	Juvenile tuber	30.41
	Mother_Gastro	Mother tuber of Gastrodia elata	36.96
	Mother_Juven	Mother tuber of Juvenile	40.79