Detail information of GWHGAAEX011410/evm.TU.scaffold_37.184


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|385810392|ref|YP_005846788.1|3.00E-22MATE family multidrug resistance protein [Ignavibacterium album JCM 16511]
KOGKOG13470Uncharacterized membrane protein, predicted efflux pump
nrgi|743793272|ref|XP_010923890.1|0PREDICTED: protein TRANSPARENT TESTA 12-like [Elaeis guineensis]
Swissprottr|Q9LYT3|TT12_ARATH2.00E-145Protein TRANSPARENT TESTA 12
trEMBLtr|M0S7U1|M0S7U1_MUSAM0MATE efflux family protein {ECO:0000256|RuleBase:RU004914}
TAIRAT3G216900MATE efflux family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000004359908755994088+
Transcript Sequence

Network for GWHGAAEX011410

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module2

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01554.17MatE381983.80E-33
PF01554.17MatE2604192.10E-30
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0055085Biological Processtransmembrane transport
GO:0015297Molecular Functionantiporter activity
GO:0042910Molecular Functionxenobiotic transporter activity
GO:0016020Cellular Componentmembrane

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms101.680
SRR2545915Juvenile tuber144.360
SRP108465SRR5643513five period of Gastrodia elata1072.390
SRR5643514five period of Gastrodia elata473.480
SRR5643515five period of Gastrodia elata1298.750
SRR5643524five period of Gastrodia elata796.440
SRR5643525five period of Gastrodia elata409.460
SRR5643528five period of Gastrodia elata692.190
SRR5643658five period of Gastrodia elata305.050
SRR5643659five period of Gastrodia elata1045.100
SRR5643660five period of Gastrodia elata1136.630
SRR5643661five period of Gastrodia elata1201.450
SRR5643662five period of Gastrodia elata1752.030
SRR5643663five period of Gastrodia elata1509.180
SRR5643664five period of Gastrodia elata933.170
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1311.320
SRR6049655Rhizomagastrodiae_C368-T10_good_1170.710
SRR6049656Rhizomagastrodiae_C368-T07_good_1241.130
SRR6049657Rhizomagastrodiae_C368-T07_good_1328.680
SRR6049658Rhizomagastrodiae_C368-T04_good_1430.930
SRR6049659Rhizomagastrodiae_C368-T04_good_1482.510
SRR6049660Rhizomagastrodiae_C368-T01_good_1380.380
SRR6049661Rhizomagastrodiae_C368-T04_good_1315.460
SRR6049662Rhizomagastrodiae_C368-T01_good_1435.180
SRR6049663Rhizomagastrodiae_C368-T01_good_1344.500
SRR6049664Rhizomagastrodiae_C368-T10_good_1290.130
SRR6049665Rhizomagastrodiae_C368-T10_good_1290.130
SRP279888GastroGastrodia elata tuber 1,637.10
JuvenJuvenile tuber535.74
Mother_GastroMother tuber of Gastrodia elata 1,095.81
Mother_JuvenMother tuber of Juvenile 1,064.40