Detail information of GWHGAAEX011411/evm.TU.scaffold_37.187
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|154253690|ref|YP_001414514.1| | 1.00E-60 | DEAD/DEAH box helicase [Parvibaculum lavamentivorans DS-1] |
| KOG | KOG0343 | 0 | RNA Helicase |
| nr | gi|743759069|ref|XP_010930157.1| | 0 | PREDICTED: DEAD-box ATP-dependent RNA helicase 32 [Elaeis guineensis] |
| Swissprot | tr|Q9FFT9|RH32_ARATH | 0 | DEAD-box ATP-dependent RNA helicase 32 |
| trEMBL | tr|M0T2Y7|M0T2Y7_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr6P00390_001} |
| TAIR | AT5G54910 | 0 | DEA(D/H)-box RNA helicase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000043 | 6185655 | 6201862 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX011411
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00270.28 | DEAD | 90 | 260 | 4.90E-43 |
| PF00271.30 | Helicase_C | 297 | 405 | 2.30E-24 |
| PF13959.5 | DUF4217 | 448 | 508 | 3.50E-14 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0003676 | Molecular Function | nucleic acid binding |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 10.830 |
| SRR2545915 | Juvenile tuber | 9.640 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 7.930 |
| SRR5643514 | five period of Gastrodia elata | 8.780 | |
| SRR5643515 | five period of Gastrodia elata | 7.690 | |
| SRR5643524 | five period of Gastrodia elata | 8.230 | |
| SRR5643525 | five period of Gastrodia elata | 5.620 | |
| SRR5643528 | five period of Gastrodia elata | 7.270 | |
| SRR5643658 | five period of Gastrodia elata | 6.060 | |
| SRR5643659 | five period of Gastrodia elata | 15.870 | |
| SRR5643660 | five period of Gastrodia elata | 17.020 | |
| SRR5643661 | five period of Gastrodia elata | 13.570 | |
| SRR5643662 | five period of Gastrodia elata | 12.810 | |
| SRR5643663 | five period of Gastrodia elata | 15.840 | |
| SRR5643664 | five period of Gastrodia elata | 12.260 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 7.490 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 8.260 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 9.410 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 7.660 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 7.680 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 9.170 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 8.700 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 8.920 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 10.870 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 9.090 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 9.680 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 9.680 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 13.47 |
| Juven | Juvenile tuber | 10.55 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 6.57 | |
| Mother_Juven | Mother tuber of Juvenile | 8.06 |