Detail information of GWHGAAEX011413/evm.TU.scaffold_371.1
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|428225783|ref|YP_007109880.1| | 4.00E-34 | ATP synthase F1 subcomplex subunit alpha [Geitlerinema sp. PCC 7407] |
| nr | gi|546354048|gb|AGW97936.1| | 2.11E-44 | ATP synthase CF1 alpha subunit (chloroplast) [Ipomoea setosa] |
| Swissprot | tr|A7Y3A4|ATPA_IPOPU | 9.00E-45 | ATP synthase subunit alpha, chloroplastic {ECO:0000255|HAMAP-Rule:MF_01346} |
| trEMBL | tr|U3R3V0|U3R3V0_IPOSE | 8.00E-45 | ATP synthase subunit alpha, chloroplastic {ECO:0000256|HAMAP-Rule:MF_01346, ECO:0000256|RuleBase:RU004286} |
| TAIR | ATCH003 | 8.00E-43 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000363 | 52 | 18776 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX011413
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00306.26 | ATP-synt_ab_C | 1 | 78 | 6.00E-33 |
| PF00124.18 | Photo_RC | 61 | 137 | 3.70E-24 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K02703 | psbA | Metabolic pathways | map01100 |
| Photosynthesis | map00195 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0015986 | Biological Process | ATP synthesis coupled proton transport |
| GO:0019684 | Biological Process | photosynthesis, light reaction |
| GO:0009772 | Biological Process | photosynthetic electron transport in photosystem II |
| GO:0045156 | Molecular Function | electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.000 |
| SRR2545915 | Juvenile tuber | 0.000 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.000 |
| SRR5643514 | five period of Gastrodia elata | 0.000 | |
| SRR5643515 | five period of Gastrodia elata | 0.000 | |
| SRR5643524 | five period of Gastrodia elata | 0.000 | |
| SRR5643525 | five period of Gastrodia elata | 0.000 | |
| SRR5643528 | five period of Gastrodia elata | 0.000 | |
| SRR5643658 | five period of Gastrodia elata | 0.000 | |
| SRR5643659 | five period of Gastrodia elata | 0.000 | |
| SRR5643660 | five period of Gastrodia elata | 0.000 | |
| SRR5643661 | five period of Gastrodia elata | 0.000 | |
| SRR5643662 | five period of Gastrodia elata | 0.000 | |
| SRR5643663 | five period of Gastrodia elata | 0.000 | |
| SRR5643664 | five period of Gastrodia elata | 0.000 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.000 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.000 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 0.000 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.000 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.000 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.000 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.000 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.000 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 0.000 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 0.000 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 0.000 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 0.000 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.00 |
| Juven | Juvenile tuber | 0.00 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.00 | |
| Mother_Juven | Mother tuber of Juvenile | 0.00 |