Gene detail

Detail information of GWHGAAEX011414/evm.TU.scaffold_371.2

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|428204117\|ref\|YP_007082706.1\|	3.00E-104	DNA-directed RNA polymerase, beta'''' subunit [Pleurocapsa sp. PCC 7327]
nr	gi\|546354826\|gb\|AGW98705.1\|	0	RNA polymerase beta' subunit (chloroplast) [Merremia quinquefolia]
Swissprot	tr\|A7Y3B4\|RPOC2_IPOPU	0	DNA-directed RNA polymerase subunit beta'' {ECO:0000255\|HAMAP-Rule:MF_01324}
trEMBL	tr\|U3R658\|U3R658_9ASTE	0	DNA-directed RNA polymerase subunit beta'' {ECO:0000256\|HAMAP-Rule:MF_01324}
trEMBL	tr\|U3R658\|U3R658_9ASTE	7.00E-76	DNA-directed RNA polymerase subunit beta'' {ECO:0000256\|HAMAP-Rule:MF_01324}
trEMBL	tr\|U3R658\|U3R658_9ASTE	2.00E-57	DNA-directed RNA polymerase subunit beta'' {ECO:0000256\|HAMAP-Rule:MF_01324}
TAIR	ATCH013	0	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000363	20843	36701	-

Transcript Sequence
>GWHTAAEX011414 ATGCTGTGGCGCACTGCTAGTTTTCGGATACGAGATATCCACCCTAGCCACTATGGGCGTATTTGCCCAATTGACACATCTGAAGGAATCAATGTTGGACTTATTGGATCCTTAGCAATTCATGCGAGGATTGGGCATTGGGGATCTCTAGAAAGCCCGTTTTATGAAATTTCCGAGAGGTCAACAGGGGTACGGATGCTTTATTTATCACCAGGTAGGGATGAATACTATATGGTAGCGGCAGGAAATTCTTTGGCCTTGAATCAGGATATTCAAGAAGACCAGGTTGTTCCAGCTCGATACCGTCAAGAATTCCTGACTATTGCATGGGAACAAGTTCATCTTCGAATTCTTCCTCCTGAGTTGAGACCAATCATTCAGATAGATGGGGGGAAACTAATGAGCTCGGATATTAATGAACTCTATCGAAGAGTTATCTATCGGAACAATACCCTTACCGATCTATTAACAACAAGTAGATCTACGCCAGGAGAATTAGTAATGTGTCAAGAGAAATTAGTACAAGAGGCTGTGGATACACTTCTGGATAATGGAATCCGCGGACAACCAATGAGGGACGGTCATAATAAAGTTTACAAGTCATTTTCGGATTTAATTGAGGGCAAAGAGGGAAGATTTCGCGAAACTCTGCTTGAACGGGCCAATCTGGTCTTTCACAATAAAGTGATAGACGGAACTGCCATGAAACGACTTATTAGTAGATTAATAAATCACTTCGGAATGGCATATACATCACATATCCTGGATCAAGTCAAAACTCTGGGTTTTCAACAAGCTACTGCTACATCCATTTCATTAGGAATTGATGATCTTTTAACAATACCTTCTAAGGGATGGCTAGTTCAAGATGCTGAACAGCAAAGTTTGATTTTGGAAAAACACCATCATTATGGGAATGTACACGCGGTAGAAAAATTACGTCAATCCATTGAAATATGGTATGCTACAAGTGAGTATTTGCGACAAGAAATGAATCCTAATTTTAGGATGACTGACCCTTTGAATCCAGTTCATATAATGTCTTTTTCGGGAGCTAGAGGAAATGCATCTCAGGTACATCAATTGGTAGGTATGAGAGGATTAATGTCAGATCCACAAGGACAAATGATTGATTTACCCATTCAAAGCAATTTACGCGAAGGACTTTCTTTAACGGAATACATCATTTCTTGCTACGGGGCCCGTAAGGGGGTTGTGGATACTGCTGTACGAACATCAGATGCTGGATATCTCACGCGCAGACTTGTTGAAGTAGTTCAACACATTGTTAATGGGATGATGCCGGAAAGGATTTTGATCCAAACATTAATCGGTCGTGTATTAGCAGATGATATATACATAGGCCCACGGTGTATTGCCACTAGAAATCAAAACATTGGAGTTGGACTTGTAAATCGATTCATAACCTTTCGAGCCCAACCAATATCGATTCGAACTCCCTTTACTTGTAGGAGTACATCTTGGATTTGTCGATTATGTTATGGCCGGAGTCCTACTCATGGCGACCTGGTTGAATTGGGGGAAGCTGTAGGTATTATTGCAGGTCAATCGATTGGAGAACCTGGGACTCAATTAACATTAAGAACTTTTCATACTGGCGGAGTATTCACAGGGGGTACTGCAGAACATGTCCGAGCCCCTTCTAATGGAAAAATAAGATTTCATGAGGATTTGGTTCATCCGACACGTACACGTCATGGGCATCCCGCTTTTCTATGTTCTATAGATTTGGATCAGGATCAAAAGAGTGCGCATTCCCTTTCTGTCAAGCGAAGATCTATTTCCAACCTCTCAGAAACTAATGATCGGGCGATACAAAAAATCTTTAGTGCGCATTTTTCTGGTCAAAAAGAAGATAGGATTGCTGATTATTCAGACCTCAATCGAATCATATGTACTGATCATTCTAATCTCGTATATCCGGCTATTCTACCTATTCTAGCCGAGAATTCGGATTTTTTGTCAAATTTATTATCAAAGAGGCGAAGAAATCAATTCATCATTCCACTCCAATCGATTCAAGAACGCAAGAAGGAATTAATGCCCTGTTCAGAAAGGAGGGTTGAGGGTTGGAACAAATGTCTAACAAGAATTCTTGGAATTCCTTGGGGATTCTTGATTGGTGCTGAGCTAACTATAGCGCAAAGTCGCATCTCTTTGGTTAATAAGATCCAAAAAGTTTATCGATCCCAGGGAGTGCAGATTCATAATCGGCATATCGAAATTATTGTACGTCAAATCACATCAAACGTGTTGGTTTCAGAAGACGGAATGTCTAATGTTTTTTCACCCGGAGAACTTATTAGATTGTTGCGAGCAAAACGAATGGGGCGTGCTTTAGAAGAAGCAATCTGTTATCGAGCCCTTTTATTGGGAATAACAAAAGCATCTCTCAATACTCAAAGTTTCATATCGGAAGCGAGTTTTCAAGAAACTGCTCGAGTTTTAGCAAAAGCAGCTCTCCAGGGGCGGGGCAATATGGATGTTTTATCATGTTCCATCAATACCCTAAAGGGGTTATACGATATATCTGGTGTGGAAGTAGGCCAACATTTCTATTGGCAAATAGGGGGTGGCCAAGTTCACGGCCAAGTACTTATTACTTCTTGGGTTGTAATTGCTATCTTATTAGGTTCAGCCACTATAGCTGTTCGCAACCCACAAACCATTCCGACTGGGGGTCAGAATTTCTTCGAATATGTTCTTGAATTCATTCGAGATGGGCTCTTTTACCTTGGAAAATCATACAATTACCTCATGGGGAGTTAG

Network for GWHGAAEX011414

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04565.15	RNA_pol_Rpb2_3	5	44	3.30E-15
PF04997.11	RNA_pol_Rpb1_1	115	217	5.20E-25
PF04983.17	RNA_pol_Rpb1_3	224	278	5.80E-05
PF05000.16	RNA_pol_Rpb1_4	311	373	4.80E-10
PF04998.16	RNA_pol_Rpb1_5	388	582	1.20E-36
PF04998.16	RNA_pol_Rpb1_5	718	806	2.30E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03046	rpoC	RNA polymerase	map03020

Gene Ontology

GO term	Ontology	Name
GO:0006351	Biological Process	transcription, DNA-templated
GO:0003899	Molecular Function	DNA-directed RNA polymerase activity
GO:0003677	Molecular Function	DNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.000
SRP064423	SRR2545915	Juvenile tuber	0.000
SRP108465	SRR5643513	five period of Gastrodia elata	0.000
	SRR5643514	five period of Gastrodia elata	0.000
	SRR5643515	five period of Gastrodia elata	0.000
	SRR5643524	five period of Gastrodia elata	0.000
	SRR5643525	five period of Gastrodia elata	0.000
	SRR5643528	five period of Gastrodia elata	0.000
	SRR5643658	five period of Gastrodia elata	0.000
	SRR5643659	five period of Gastrodia elata	0.000
	SRR5643660	five period of Gastrodia elata	0.000
	SRR5643661	five period of Gastrodia elata	0.000
	SRR5643662	five period of Gastrodia elata	0.000
	SRR5643663	five period of Gastrodia elata	0.000
	SRR5643664	five period of Gastrodia elata	0.000
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	0.000
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	0.000
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	0.000
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	0.000
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	0.000
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	0.000
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	0.000
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	0.000
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	0.000
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	0.000
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	0.000
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	0.000
SRP279888	Gastro	Gastrodia elata tuber	0.00
	Juven	Juvenile tuber	0.00
	Mother_Gastro	Mother tuber of Gastrodia elata	0.00
	Mother_Juven	Mother tuber of Juvenile	0.00