Detail information of GWHGAAEX011421/evm.TU.scaffold_371.9
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| nr | gi|656364550|gb|AID16292.1| | 8.38E-91 | PsbB, partial (chloroplast), partial (chloroplast) [Centaurea cyanus] |
| Swissprot | tr|A7M989|PSBB_CUSRE | 1.00E-89 | Photosystem II CP47 reaction center protein {ECO:0000255|HAMAP-Rule:MF_01495} |
| trEMBL | tr|A0A068C678|A0A068C678_CENCY | 3.00E-91 | PsbB {ECO:0000313|EMBL:AID16292.1} (Fragment) |
| TAIR | ATCH048 | 4.00E-88 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000363 | 84899 | 86419 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX011421
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00421.18 | PSII | 1 | 101 | 6.20E-53 |
| PF00737.19 | PsbH | 112 | 163 | 1.60E-30 |
| PF00421.18 | PSII | 160 | 292 | 4.00E-61 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K02704 | psbB | Metabolic pathways | map01100 |
| Photosynthesis | map00195 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0015979 | Biological Process | photosynthesis |
| GO:0050821 | Biological Process | protein stabilization |
| GO:0009767 | Biological Process | photosynthetic electron transport chain |
| GO:0019684 | Biological Process | photosynthesis, light reaction |
| GO:0042301 | Molecular Function | phosphate ion binding |
| GO:0016168 | Molecular Function | chlorophyll binding |
| GO:0009523 | Cellular Component | photosystem II |
| GO:0009521 | Cellular Component | photosystem |
| GO:0016020 | Cellular Component | membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.000 |
| SRR2545915 | Juvenile tuber | 0.000 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.000 |
| SRR5643514 | five period of Gastrodia elata | 0.000 | |
| SRR5643515 | five period of Gastrodia elata | 0.000 | |
| SRR5643524 | five period of Gastrodia elata | 0.000 | |
| SRR5643525 | five period of Gastrodia elata | 0.000 | |
| SRR5643528 | five period of Gastrodia elata | 0.000 | |
| SRR5643658 | five period of Gastrodia elata | 0.000 | |
| SRR5643659 | five period of Gastrodia elata | 0.000 | |
| SRR5643660 | five period of Gastrodia elata | 0.000 | |
| SRR5643661 | five period of Gastrodia elata | 0.000 | |
| SRR5643662 | five period of Gastrodia elata | 0.000 | |
| SRR5643663 | five period of Gastrodia elata | 0.000 | |
| SRR5643664 | five period of Gastrodia elata | 0.000 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.000 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.000 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 0.000 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.000 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.000 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.000 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.000 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.000 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 0.000 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 0.000 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 0.000 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 0.000 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.00 |
| Juven | Juvenile tuber | 0.00 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.00 | |
| Mother_Juven | Mother tuber of Juvenile | 0.00 |