Detail information of GWHGAAEX011429/evm.TU.scaffold_375.1
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 1.00E-22 | FOG: PPR repeat |
| nr | gi|672163097|ref|XP_008801381.1| | 2.45E-42 | PREDICTED: pentatricopeptide repeat-containing protein At4g04790, mitochondrial-like [Phoenix dactylifera] |
| Swissprot | tr|Q6NQ81|PP304_ARATH | 5.00E-23 | Pentatricopeptide repeat-containing protein At4g04790, mitochondrial (Precursor) |
| trEMBL | tr|M0S377|M0S377_MUSAM | 8.00E-43 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr1P26200_001} |
| trEMBL | tr|M0S377|M0S377_MUSAM | 5.00E-30 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr1P26200_001} |
| TAIR | AT4G04790 | 1.00E-22 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000369 | 3738 | 7040 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX011429
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 125 | 149 | 0.068 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.000 |
| SRR2545915 | Juvenile tuber | 0.130 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.160 |
| SRR5643514 | five period of Gastrodia elata | 1.540 | |
| SRR5643515 | five period of Gastrodia elata | 1.790 | |
| SRR5643524 | five period of Gastrodia elata | 1.270 | |
| SRR5643525 | five period of Gastrodia elata | 0.650 | |
| SRR5643528 | five period of Gastrodia elata | 1.040 | |
| SRR5643658 | five period of Gastrodia elata | 1.080 | |
| SRR5643659 | five period of Gastrodia elata | 2.500 | |
| SRR5643660 | five period of Gastrodia elata | 4.000 | |
| SRR5643661 | five period of Gastrodia elata | 2.200 | |
| SRR5643662 | five period of Gastrodia elata | 2.300 | |
| SRR5643663 | five period of Gastrodia elata | 2.360 | |
| SRR5643664 | five period of Gastrodia elata | 1.380 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.470 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 2.040 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 2.070 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.790 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.000 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.000 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.700 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.000 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 0.370 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 0.270 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 1.170 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 1.170 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 3.29 |
| Juven | Juvenile tuber | 2.71 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 2.49 | |
| Mother_Juven | Mother tuber of Juvenile | 1.79 |