Gene detail

Detail information of GWHGAAEX011431/evm.TU.scaffold_375.3

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1922	2.00E-173	Rho GTPase effector BNI1 and related formins
nr	gi\|743762262\|ref\|XP_010907237.1\|	0	PREDICTED: formin-like protein 5 isoform X2 [Elaeis guineensis]
Swissprot	tr\|Q0D5P3\|FH11_ORYSJ	9.00E-178	Formin-like protein 11 (Precursor)
trEMBL	tr\|U5GUF3\|U5GUF3_POPTR	0	Formin-like protein {ECO:0000256\|RuleBase:RU361260} (Fragment)
TAIR	AT5G54650	2.00E-173	formin homology5

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000369	44349	57795	-

Transcript Sequence
>GWHTAAEX011431 GAGAATGGCGCCGCCACGGTGGCCAACTCCTGAACGAGTGCAGCTAAAAATTTGTAGGGCTTCGACCGCCATGAATCGGCTTCACGCGGCTTTGAACCCTCCCTGCCTGTCGAGCTGAAACCCTAGCTCGCCATTCATCGATTTTACTGCCCCTCAATCCCGCCGGAGCTCCGTTTCTGAAAATCTACAGAGGGGCTCTTGGGAGATTTTCTTCTTACTCCCCCATTTCCCTTTTATAGTTGTTTTTTCATTTTCTCGGGTCTCTGTTAGTAATCAGCTTTGCAGTTGCCCCGAGATGGTGCGGCCAACTATAAACTCAACTTTCAGCAATCGATGAAATGAAAAGAGGATATCCTATCTGGAGTGCAGATCCAATGAACGATGGGTACGGGATGCGTACTTGTTTTAATCATTTTTGTTGCTTTGTTTGTATGTTCCATGCCGGAGGGATCGGTGGACAGGCAAGGGGTCGATGGATTATTTATTGGATCCCAGTTGTCAGCTGTCGCGCCTATGCCGGATGTTGAGGAGCGCATGATGGAGCAAATATGGTCAAATTGTGAGCTGGATTTTTCTGGGGAGAAATCTCTTATGAGAGTTGTGGACAAAAATATTTTAGATGAAAATGCTGGTTCAACTAATAGGCATGCTGGGCATCCAATAAGATTACTTGTTCAAAATACTATTTCAAGAAAGCTTTTGGCAGGTCAATCAGTTAACGAGAACTTCCCTTCCTCTATTTTCCTTGCTCCTGCTTTGATGCCTAATCTTCAAAACCAAGTTTCAAAAACAGCTTCAGCCTCCCCTGGCGAACTTACTAGTAATATATCGCCTTCTAGTGATGCTCCTATGACAGAAGATAATTTTGAAAATTTTTCTCCAACTCCATTACCGGGTGGCAATTTTGTACCTGAAGTTAATGATCCAAGCTCTCGTTATGCCAGTGCACCATCTGAAAGGAAAGACAACAAAACAAAAACAATCATCATTACCGCTATTGTAACTGCAACAGTTACTCTTAGTCTTGCTGCTTGTTTCTTTTGTTGCTTTTATAGATATCTCATGAACAAGTACCAATTTCCTAATGGGGAAAGGGATGACAGACCGCTTTTATCCATAAGCCTAAGTGACTTCTCAGTTTCCTCACACGTGGATTTTGGTCATTCTAAGTCATTCCACAACGATAAGAATGGTGCCTTATCTTTGAAGACTGAGGCAAACCAAAATGGTCATACTGCATTGTTGAATATCCATACTGATTTCCAAGCAGATTCATTACCTTCCGCACTTGCCAGTTTAACCGAGCCTACTAATGCAATTGGACATGCACTTGAATCAGCTCCTTCATCACTTGTAAAGCATCCTACTGGTACTATGGTTTCTTCTACCGTTCTTGATCCCTCTCCCACCCTTGCAAACCCAAAACCCCTTCCTGCACCACCAAAGGGTGGGCCTCTACCGCCAAAAGCTACTCCACCCCCAAAGGGTGGTCCACCACCACCAAAAGGGCCTCCGCATCCACCACCATCAAAAGGATCTCTCCATCCACCACCGCCAAAAGGACCTCCCCGTCCACCACAACCAAGCTCAAGCTCTTCGGCTGTTCCCCTCCCCCCATCTCATCATTCCACCAATCCTTTTTCTAGTGATACCAAGACCAAGCTTAAGCCATTCTTCTGGGATAAAGTCACGGCAAATCCCGATCAATCCATGGTGTGGCATCAGATTAAGTCAGGTTCATTTCAGTTTAGTGAGGAGATGATTGAAACATTGTTTGGATATAATGCTAAGGATAAATACTGGAATGATACTAAAAAAGATTTTGCAACTAATCCTTTCGTCAATCGCATTCAAATTCTTGACCCCAAGAAATCACAAAATTTGGCAATTTCTTTGAAGGCTTGGAATGTAAGAGTTGATGAAATTTGTGATGCATTAATGGAAGGAAATGAGCTTCCGATTGAGCTACTTCAAATTTTGTTGAGAATGGCGCCAACTACCGATGAAGAGCTAAAGCTTAAACTGTTTAATGACAACATGGCTTTACAAGGACCTGCTGAACTATTTCTGAAAACTGTACTGAACGTTCCTTTTGCTTTTAAGAGGATGGAAGCATTGCTTTTTATGACCACTCTACAAGAGGAATCGACATCTGTGAAGGAATCATTAGCAACTGTTGAGGAAGCCTGTAAGGAACTCAGAAATAGCCGTTTATTTTTAAAGCTACTAGAGGCAGTTCTTAAAACTGGTAACCGGATGAATGATGGTACATACCGAGGAAGAGCTCAGGCATTTAAGCTGGACACACTTTTGAAGCTTTCAGATGTTAAGGGTGCCGATGGGAAGACCACCCTTCTTCATTTTGTTGTTCAAGAGATTATTCAGTCTGAAGGTCGACGTGCTACGCCAGTAGCCAGAGAAAGTAGAAGTAATCCCAGCATTAATTCTGATAATATTACTGATAATGTTTCTGAACAATCTGAAGGCCAGTACTGCACCCTTGGCCTTGAGGTAGTTTCAAGTCTGAGTAGTGAACTTAAGAATGTCAAAAGGTCAGCTGGATTGGATGCTGATGCTTTAACTGGTGTAGTGACAAATTTGGGGCAAAGGTTGGTGAAGACAAAGGAGTTCTTGAACACGGATATGAGAAATTTAATGGAGGAGAGTAATTTCCACGACTGCTTAAAAGCTTTTGTTGAACATGCTGAGGCTGATATTTCTTACCTATTTGAGGAAGAAAAGCGAATAAGATTGTTGGTGAAGAATACAACGGATTATTTTCATGGAAGTGCCGGGAGAGATGAGGGATTAAGATTGTTCGTCATTGTGCGAGACTTTATGGGTATGTTGGACAAGGTTTGCAGAGAGGTTAGAGAAACGGAAAAGAAAGCGTTGAAAGTACCAAGACAGAAATACAGTTTGACATCACAATCAATTGCAGAACCACAACAACTTCTATTTCCAACAATTAAGGAACATCTTGTTGAAGATTTTAGTTCAGATGATGAGTGATCTTAATTGTTAGCATTTAAAGAATTCCTCTTGCCAGAAATTGCTTGGTTATTTCTACCACTTCGCCCCCTCTTGTATATATACATCAGGAACTTAGAGAATGCTATCAACTCTTCTTGCTTACTCAGCTTAATTTTTAATAGGTAGTAGGTATCATTTTTTTGCCCATTTATTTACATAACTATGGAAACCTTATATATTATAACATAATGTAATTTGTACCATTGATTTTTTACAAAAATTTAGCAAAATATCTTCATAATATATAAAGTTTCCTACGTTATGCATGTAAATAGCCCCTTTTGTGTCTATCTATGTATGTAAAAGTTATCTGAGATTCCAAATTTTCTTGAGTTGATTCTGAGTATAAGTTGGTTTGTTGATTAATGACTTAATTAAGTTTAATAATAAGATTATTTAGTATTCA

Network for GWHGAAEX011431

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02181.22	FH2	423	823	2.80E-104

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	37.330
SRP064423	SRR2545915	Juvenile tuber	34.730
SRP108465	SRR5643513	five period of Gastrodia elata	34.170
	SRR5643514	five period of Gastrodia elata	39.080
	SRR5643515	five period of Gastrodia elata	53.780
	SRR5643524	five period of Gastrodia elata	37.380
	SRR5643525	five period of Gastrodia elata	55.070
	SRR5643528	five period of Gastrodia elata	52.680
	SRR5643658	five period of Gastrodia elata	49.000
	SRR5643659	five period of Gastrodia elata	58.120
	SRR5643660	five period of Gastrodia elata	53.310
	SRR5643661	five period of Gastrodia elata	52.540
	SRR5643662	five period of Gastrodia elata	54.150
	SRR5643663	five period of Gastrodia elata	60.240
	SRR5643664	five period of Gastrodia elata	57.390
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	54.720
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	64.320
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	53.210
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	63.630
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	83.820
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	89.400
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	67.030
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	77.310
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	45.310
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	62.930
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	40.330
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	40.330
SRP279888	Gastro	Gastrodia elata tuber	54.80
	Juven	Juvenile tuber	55.13
	Mother_Gastro	Mother tuber of Gastrodia elata	94.73
	Mother_Juven	Mother tuber of Juvenile	71.06