Detail information of GWHGAAEX011436/evm.TU.scaffold_3770.1
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|428311002|ref|YP_007121979.1| | 2.00E-10 | glycerophosphoryl diester phosphodiesterase [Microcoleus sp. PCC 7113] |
| KOG | KOG2258 | 4.00E-72 | Glycerophosphoryl diester phosphodiesterase |
| nr | gi|695076471|ref|XP_009385529.1| | 4.12E-84 | PREDICTED: probable glycerophosphoryl diester phosphodiesterase 2 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q9LVN0|GPDL7_ARATH | 1.00E-72 | Glycerophosphodiester phosphodiesterase GDPDL7 {ECO:0000305} (Precursor) |
| trEMBL | tr|F6GZ35|F6GZ35_VITVI | 7.00E-84 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB45221.1} |
| TAIR | AT5G58170 | 4.00E-72 | SHV3-like 5 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00003764 | 20 | 842 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX011436
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module6 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006629 | Biological Process | lipid metabolic process |
| GO:0008081 | Molecular Function | phosphoric diester hydrolase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 9.190 |
| SRR2545915 | Juvenile tuber | 4.110 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.000 |
| SRR5643514 | five period of Gastrodia elata | 0.130 | |
| SRR5643515 | five period of Gastrodia elata | 0.000 | |
| SRR5643524 | five period of Gastrodia elata | 0.000 | |
| SRR5643525 | five period of Gastrodia elata | 0.000 | |
| SRR5643528 | five period of Gastrodia elata | 0.180 | |
| SRR5643658 | five period of Gastrodia elata | 0.000 | |
| SRR5643659 | five period of Gastrodia elata | 0.000 | |
| SRR5643660 | five period of Gastrodia elata | 0.000 | |
| SRR5643661 | five period of Gastrodia elata | 0.000 | |
| SRR5643662 | five period of Gastrodia elata | 0.000 | |
| SRR5643663 | five period of Gastrodia elata | 0.000 | |
| SRR5643664 | five period of Gastrodia elata | 0.290 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 18.400 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 8.780 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 19.490 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 17.510 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 35.530 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 41.800 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 31.340 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 34.300 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 25.400 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 28.330 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 7.880 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 7.880 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 6.32 |
| Juven | Juvenile tuber | 0.05 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 2.23 | |
| Mother_Juven | Mother tuber of Juvenile | 0.36 |