Gene detail

Detail information of GWHGAAEX011442/evm.TU.scaffold_38.4

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1171	3.00E-51	Metallothionein-like protein
nr	gi\|743769272\|ref\|XP_010914918.1\|	2.99E-137	PREDICTED: CRC domain-containing protein TSO1-like [Elaeis guineensis]
Swissprot	tr\|F4JIF5\|TCX2_ARATH	9.00E-53	Protein tesmin/TSO1-like CXC 2
trEMBL	tr\|M0S8P8\|M0S8P8_MUSAM	2.00E-87	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr2P17070_001}
TAIR	AT3G22780	3.00E-51	Tesmin/TSO1-like CXC domain-containing protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000041	133047	158946	+

Transcript Sequence
>GWHTAAEX011442 AAATGATTTTCGCGAGTAGAACGGTAAAAAAAAACCCTAGAAAGCTGGCACAGCGGGATCATTTGGTTTTAACTCGTGTAAGGCACAAGAGCGAAGGGGCTCTTTGGCCTTCGAAGTGTTAGGGTTTTGTTTCAAGAGATGAGTACTCCTCAGCGCTCCAAGACGCCAGCAGCTACTCCGTTGTCAAAGGATTCTCCAACCTCAATTTTTTTTGATAATTTATCTCCAATACAAGTAATTAGTAGCAAGTTAATCAGTCAAGCTTTTGATAACATTGATGTTTTATCTCCTCAACCAGTCTTCGCAACACCGCAAAATCGACTTACAAATTTAAAATTGAGGAAAAGGTCCCAGTCATTGGCCTTTCATAGTCCTCAGAAGATCTGCCCAAGTGATGCAGTTGTTGCTACTACATCTTTGCAGCATCCTGATACGACTAGACGATTTATCCCAGTGGAAACAGTTGAATTAAGTAATTGTAGTGACAGAAAGTATAAAACTGATGATCATCCTCATGCTGAAGTTTGCAGTATTCCTACTAATGGAGTAGATGAATTTCTGTCCATACCCATTGATGATTGTGAAAATTCCTCTTGTTCGCCCGGTTATCTTTTGGGTGATGCTTGTGATTTGGTTCTGGATAAAGACACCGCTCCTGTTAGTACCAACAGAGATCAAGTGGTATGCCCCAACGGTGATTCTGTGCAGGTTCCATCCATAAAATCTCCTTCCACTGTAACCAATTATGTAGCTGAATGCACTGAGCATAGAGAGCTTGTTATCATGACAGACGAGCAACCAAATGAAGCTGTTCTTTCTCAAGAATTTCGGAACAACTCTATTGTATATGAAAGGCCTACTTTAGAGTTTTTTGTATCAAATGCTGAAGAGAGTTTCAACATAAACGCTGTTGATCAAAATTTAACTTATCAACCTGAGCACAATCCAGATATGCATATGCCAAATTGTCAAACTGTGTCCGCTACTTTTGAAAAATTTGACAACTTGGGAGGACCGGTTGGCAAGAAGATTGAAGAGAACTTGAATTCTCTTATAGATTCAGATTCTTGTGCACAAAATGAACCTATCACATTAGATAGGGAAGAGCCTATTGTTTCATGCGTTCCAAACACTATGAATTTCAGGAATGCAGATCATGTGGATGGATGTCCTAGCACTTCCGGTTCTTATCTGCTTGGAATTCAGGATGTGGAATTTCGTATCTCCAAGCCACTGGGCCATTTGGACAGTGTTTATGATGAAAAGTGTGAAATACTAAGTAATAATCAGTTACATTATCATCATCATGGAATTTCAAGACAATTGAAAGATGAACCTGCCAAAGGCCAGATTACCTATGATCAGGAGGATGTGCCCCACCATAGTCGCGGCATGTATAAACGTCTTCAGTTTGAGGATGTTGGAAAGAAGGAACGGTGCGTTGCATGCACTGAGAATGGTACAAACTTGAAAAGTTCTTGTTTCATGTCTGCGACAGAAACAATGCCTTCTATTATGGAAAGTTCAAATGCTTCTACTTCAACTACAATTACAATACCGGCCAAAATTCCAAAGGTTCAGTTGCCATCAGGAAATATTAGTGGCAATCATTTGTCCAATACCAATTTTCTGAAACAAAGTAGAGAAAGATGCACTGCAGTCGTTCCTAGAACATTTGGCATTGGCTTGCACTTAAATGCCATTGGTACATCCGGGCAAATGAGTTGCCCAATGGATAGTTCAGGATCAAGAGCAAAAGCAATTTCTCCCAATGGTTGTGAAGTAACTTCGCAACCTTTAAATAATACAATTCTCACAAGGAATAGAGAAGCTTCAGTTCAGTTAAATTCAAATTCTGATGATTCTTCATTTGGCTCAATGGGTGAATGCAACAGTGAGCTTTATCCAAAATTGCTAGATTCTGTTCCAGATTGTCATTCCCCGTTCGATGTGGAACCATTGGATATGTGTAGGCAGCCGGAATTTAGTGATCACCACATAACCCCGTGTAGTAGAATCAGACTGCCTTCTGTAGAAGAGGTTTCATTTCAAAATAGCCTTGGAAAGAAAAGAAAGAAGGCTCCGGAGATTGAGGGACAAAAAAGATGCAATTGCAAGCGGTCTAAGTGCCTGAAACTTTATTGTGATTGTTTTGCTGCTGGAGTGTTTTGCAATGACGCTTGTGCTTGCCAAGGGTGTTCTAATAACTGTGAAAATGAAGAAACAGTTTCTTCAACAAGGCAGCAGATAGAAGCACGTAACCCACTTGCGTTTGCTCCCAGAGTTGTGCATGCTAATGGTGGCCTAAACGATAGTGTTGATAATAAGCACATCACACCACCTTCCGCAAGGCATAAAAGAGGCTGCAACTGTAAGAAGTCCAAGTGCCTTAAGAAGTATTGTGAATGCTTTCAGGCTGGTGTTGGATGTTCCTTGGCATGCCGGTGCGAAGGATGCAAGAATGCCTTTGGAACTAAAGAAGCATGCGGCGACATCACTGAGATGATTTTAGAGCATCAAAAACCCAAGGGTGATGGCCTTGACAGGGAATCATCTGCTGGAACACTGGAAGTCATCATGAATGTCAACAGCCAAAAAGTGCCCAACACCAAGCGATTCTCTCCTCCTCCGGCACCTTTAATGCAGTGCACAAAAGTGAACAGCGTTGTTGCCAGATTGCACATCATTCCTGCAAGCTGCCATCCTTCTCTGGAATCTAAATTTACCTCAGTGCCGTCTTTAGATTCCTCAACTTCAATGAATCAAACAAGGCATAATAGCTTACATGCAGATATAAATGAAGAGGCTTTATCTGTTGTCCCATATCCTGCTCGTTCAAGTTCTTCAGGTCCTTCTCCTAGCCTCTGTGAATCTTCTGCACCAAAAACTGAGCATGCTAAAATCTACTCTTCGAAATTGGTCCATCATTGCTCCCCTGCTCCTAAACAAGGCCGCCTCGGCGAAGGGAGATTCATAATAAGGCCTGTTGTTGATGGGCTGCACTGCCTTCTCACAGACGAAACCCCAGAAATCTTAAATTCTTCTTCTCGTTCTCCTATCAAAACAGTAAAGATCAGCTCCCCGAATCAGAAGCGCGTTTCCCCACCGAAAAAGCCATTGCTCAAGGCGGGATCAAGCTTTTCGGCAGGTTTGAGGAGCGGACGCAAATACGTTCTCAGTTCTATTCCACAGTTTCCATCTCTCACCCCTTACAGAAATAGCTACAAAGATAATGGAATTGAAAGTTCATCTAAAATTAAGGGTAACGGAAGGCATTCTGAAAATAATAGCAGCAAAACTGACATCCCAATGCTAGAATCACAGTTGTGATGTTTCAGATTGAACTGCAGTTCAAATTATAAAGTGGCACCTCTAAATCAGACTGCAGTTCTAAATTTTACAGTTGAAAGGCTGATTTCCTTTCTTGCCTATGATCTGTCTGATTATTGAAAGCTTTCTCCAGTCTTTCATCTGCAGTTGATGTTTCAGACAAGAGGTGCTGTTGCATCTTGGATTTTGAAAGGTTTAGATAGTGTAAATAAAAAAATCAAGCAGCTCAGCTATTTGTACATTGTGTTATTTTTCCTGTAGCTGAAATCTTGATTCTGTGAACTGACATGCATAAATTTGCAATTGATATTTTTTTATAAACTGTTATTCTATATAATGCACATAGAATGGTTACAAGCTATCCAATAGAGTGATTTGGTCATCTGCAATTAATTCCAAGCAACTTTTCTATTGCTACTTTGGTTGCTTTTAACAAAAAT

Network for GWHGAAEX011442

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03638.14	TCR	654	690	5.30E-11
PF03638.14	TCR	740	776	2.00E-12

Protein Sequence

>GWHPAAEX011442
MSTPQRSKTPAATPLSKDSPTSIFFDNLSPIQVISSKLISQAFDNIDVLSPQPVFATPQNRLTNLKLRKRSQSLAFHSPQKICPSDAVVATTSLQHPDTTRRFIPVETVELSNCSDRKYKTDDHPHAEVCSIPTNGVDEFLSIPIDDCENSSCSPGYLLGDACDLVLDKDTAPVSTNRDQVVCPNGDSVQVPSIKSPSTVTNYVAECTEHRELVIMTDEQPNEAVLSQEFRNNSIVYERPTLEFFVSNAEESFNINAVDQNLTYQPEHNPDMHMPNCQTVSATFEKFDNLGGPVGKKIEENLNSLIDSDSCAQNEPITLDREEPIVSCVPNTMNFRNADHVDGCPSTSGSYLLGIQDVEFRISKPLGHLDSVYDEKCEILSNNQLHYHHHGISRQLKDEPAKGQITYDQEDVPHHSRGMYKRLQFEDVGKKERCVACTENGTNLKSSCFMSATETMPSIMESSNASTSTTITIPAKIPKVQLPSGNISGNHLSNTNFLKQSRERCTAVVPRTFGIGLHLNAIGTSGQMSCPMDSSGSRAKAISPNGCEVTSQPLNNTILTRNREASVQLNSNSDDSSFGSMGECNSELYPKLLDSVPDCHSPFDVEPLDMCRQPEFSDHHITPCSRIRLPSVEEVSFQNSLGKKRKKAPEIEGQKRCNCKRSKCLKLYCDCFAAGVFCNDACACQGCSNNCENEETVSSTRQQIEARNPLAFAPRVVHANGGLNDSVDNKHITPPSARHKRGCNCKKSKCLKKYCECFQAGVGCSLACRCEGCKNAFGTKEACGDITEMILEHQKPKGDGLDRESSAGTLEVIMNVNSQKVPNTKRFSPPPAPLMQCTKVNSVVARLHIIPASCHPSLESKFTSVPSLDSSTSMNQTRHNSLHADINEEALSVVPYPARSSSSGPSPSLCESSAPKTEHAKIYSSKLVHHCSPAPKQGRLGEGRFIIRPVVDGLHCLLTDETPEILNSSSRSPIKTVKISSPNQKRVSPPKKPLLKAGSSFSAGLRSGRKYVLSSIPQFPSLTPYRNSYKDNGIESSSKIKGNGRHSENNSSKTDIPMLESQL

Gene family

Gene family	subfamily
Transcription Factors Family	CPP

KEGG pathway

KO	Enzyme	pathway	mapID
K21776	LIN54	Cellular senescence	map04218

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	10.330
SRP064423	SRR2545915	Juvenile tuber	10.310
SRP108465	SRR5643513	five period of Gastrodia elata	4.780
	SRR5643514	five period of Gastrodia elata	4.530
	SRR5643515	five period of Gastrodia elata	4.420
	SRR5643524	five period of Gastrodia elata	3.780
	SRR5643525	five period of Gastrodia elata	5.950
	SRR5643528	five period of Gastrodia elata	4.350
	SRR5643658	five period of Gastrodia elata	5.840
	SRR5643659	five period of Gastrodia elata	5.460
	SRR5643660	five period of Gastrodia elata	7.540
	SRR5643661	five period of Gastrodia elata	5.500
	SRR5643662	five period of Gastrodia elata	5.160
	SRR5643663	five period of Gastrodia elata	4.700
	SRR5643664	five period of Gastrodia elata	5.740
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	5.090
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	9.280
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	5.270
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	7.090
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	4.970
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	5.720
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	5.500
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	6.410
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	4.610
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	4.310
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	4.850
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	4.850
SRP279888	Gastro	Gastrodia elata tuber	7.15
	Juven	Juvenile tuber	5.89
	Mother_Gastro	Mother tuber of Gastrodia elata	3.04
	Mother_Juven	Mother tuber of Juvenile	3.38