Detail information of GWHGAAEX011447/evm.TU.scaffold_38.11
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1414 | 1.00E-49 | Transcriptional activator FOSB/c-Fos and related bZIP transcription factors |
| nr | gi|743769230|ref|XP_010914895.1| | 1.15E-68 | PREDICTED: transcription factor HY5 [Elaeis guineensis] |
| Swissprot | tr|O24646|HY5_ARATH | 4.00E-50 | Transcription factor HY5 |
| trEMBL | tr|M0U4B4|M0U4B4_MUSAM | 8.00E-60 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr9P28570_001} |
| TAIR | AT5G11260 | 1.00E-49 | Basic-leucine zipper (bZIP) transcription factor family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000041 | 416261 | 432711 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX011447
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module3 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00170.20 | bZIP_1 | 81 | 142 | 1.80E-13 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | bZIP |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K16241 | HY5 | Circadian rhythm - plant | map04712 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0005634 | Cellular Component | nucleus |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 57.260 |
| SRR2545915 | Juvenile tuber | 21.650 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 26.860 |
| SRR5643514 | five period of Gastrodia elata | 25.380 | |
| SRR5643515 | five period of Gastrodia elata | 20.270 | |
| SRR5643524 | five period of Gastrodia elata | 18.560 | |
| SRR5643525 | five period of Gastrodia elata | 40.640 | |
| SRR5643528 | five period of Gastrodia elata | 25.660 | |
| SRR5643658 | five period of Gastrodia elata | 32.460 | |
| SRR5643659 | five period of Gastrodia elata | 51.940 | |
| SRR5643660 | five period of Gastrodia elata | 67.200 | |
| SRR5643661 | five period of Gastrodia elata | 51.740 | |
| SRR5643662 | five period of Gastrodia elata | 33.760 | |
| SRR5643663 | five period of Gastrodia elata | 79.740 | |
| SRR5643664 | five period of Gastrodia elata | 84.860 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 16.760 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 20.760 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 11.460 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 29.360 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 21.790 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 37.050 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 29.480 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 28.960 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 9.180 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 12.080 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 10.000 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 10.000 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 115.49 |
| Juven | Juvenile tuber | 39.67 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 11.31 | |
| Mother_Juven | Mother tuber of Juvenile | 22.69 |