Detail information of GWHGAAEX011448/evm.TU.scaffold_38.12


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|429217521|ref|YP_007175511.1|2.00E-38proteasome endopeptidase complex subunit beta [Caldisphaera lagunensis DSM 15908]
KOGKOG01756.00E-16020S proteasome, regulatory subunit beta type PSMB5/PSMB8/PRE2
nrgi|593329004|ref|XP_007137929.1|1.62E-167hypothetical protein PHAVU_009G167300g [Phaseolus vulgaris]
Swissprottr|O24361|PSB5_SPIOL3.00E-161Proteasome subunit beta type-5 (Precursor)
trEMBLtr|V7AZ89|V7AZ89_PHAVU6.00E-168Proteasome subunit beta type {ECO:0000256|RuleBase:RU004203}
TAIRAT3G263406.00E-160N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000041484497498367+
Transcript Sequence

Network for GWHGAAEX011448

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00227.25Proteasome522322.00E-48
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02737PSMB5 Proteasome map03050

Gene Ontology

GO term OntologyName
GO:0051603Biological Processproteolysis involved in cellular protein catabolic process
GO:0004175Molecular Functionendopeptidase activity
GO:0004298Molecular Functionthreonine-type endopeptidase activity
GO:0005839Cellular Componentproteasome core complex

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms316.130
SRR2545915Juvenile tuber273.690
SRP108465SRR5643513five period of Gastrodia elata276.750
SRR5643514five period of Gastrodia elata283.360
SRR5643515five period of Gastrodia elata263.220
SRR5643524five period of Gastrodia elata268.590
SRR5643525five period of Gastrodia elata273.970
SRR5643528five period of Gastrodia elata283.950
SRR5643658five period of Gastrodia elata289.080
SRR5643659five period of Gastrodia elata434.450
SRR5643660five period of Gastrodia elata475.060
SRR5643661five period of Gastrodia elata436.710
SRR5643662five period of Gastrodia elata456.760
SRR5643663five period of Gastrodia elata436.380
SRR5643664five period of Gastrodia elata512.730
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1282.520
SRR6049655Rhizomagastrodiae_C368-T10_good_1252.080
SRR6049656Rhizomagastrodiae_C368-T07_good_1265.310
SRR6049657Rhizomagastrodiae_C368-T07_good_1317.550
SRR6049658Rhizomagastrodiae_C368-T04_good_1294.220
SRR6049659Rhizomagastrodiae_C368-T04_good_1305.790
SRR6049660Rhizomagastrodiae_C368-T01_good_1270.010
SRR6049661Rhizomagastrodiae_C368-T04_good_1283.550
SRR6049662Rhizomagastrodiae_C368-T01_good_1271.310
SRR6049663Rhizomagastrodiae_C368-T01_good_1273.200
SRR6049664Rhizomagastrodiae_C368-T10_good_1296.850
SRR6049665Rhizomagastrodiae_C368-T10_good_1296.850
SRP279888GastroGastrodia elata tuber 481.82
JuvenJuvenile tuber453.06
Mother_GastroMother tuber of Gastrodia elata 309.74
Mother_JuvenMother tuber of Juvenile 466.01