Detail information of GWHGAAEX011450/evm.TU.scaffold_38.14
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|17231249|ref|NP_487797.1| | 1.00E-18 | cellulose synthase catalytic subunit [Nostoc sp. PCC 7120] |
| nr | gi|743769220|ref|XP_010914890.1| | 0 | PREDICTED: probable cellulose synthase A catalytic subunit 1 [UDP-forming] [Elaeis guineensis] |
| Swissprot | tr|Q6AT26|CESA1_ORYSJ | 0 | Probable cellulose synthase A catalytic subunit 1 [UDP-forming] |
| trEMBL | tr|M0SW34|M0SW34_MUSAM | 0 | Cellulose synthase {ECO:0000256|RuleBase:RU361116} |
| TAIR | AT4G32410 | 0 | cellulose synthase 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000041 | 520665 | 529688 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX011450
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF14569.5 | zf-UDP | 29 | 105 | 1.80E-40 |
| PF03552.13 | Cellulose_synt | 362 | 1079 | 0 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT2 |
| Carbohydrate-Active enzymes Family | GT2 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0030244 | Biological Process | cellulose biosynthetic process |
| GO:0016760 | Molecular Function | cellulose synthase (UDP-forming) activity |
| GO:0016020 | Cellular Component | membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 37.230 |
| SRR2545915 | Juvenile tuber | 67.430 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 52.720 |
| SRR5643514 | five period of Gastrodia elata | 54.960 | |
| SRR5643515 | five period of Gastrodia elata | 58.330 | |
| SRR5643524 | five period of Gastrodia elata | 56.080 | |
| SRR5643525 | five period of Gastrodia elata | 62.660 | |
| SRR5643528 | five period of Gastrodia elata | 51.460 | |
| SRR5643658 | five period of Gastrodia elata | 73.850 | |
| SRR5643659 | five period of Gastrodia elata | 64.450 | |
| SRR5643660 | five period of Gastrodia elata | 58.760 | |
| SRR5643661 | five period of Gastrodia elata | 62.860 | |
| SRR5643662 | five period of Gastrodia elata | 51.270 | |
| SRR5643663 | five period of Gastrodia elata | 67.710 | |
| SRR5643664 | five period of Gastrodia elata | 44.060 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 38.780 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 38.520 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 39.830 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 35.150 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 22.980 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 26.640 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 39.980 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 31.570 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 47.080 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 40.670 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 43.570 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 43.570 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 30.99 |
| Juven | Juvenile tuber | 29.54 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 32.93 | |
| Mother_Juven | Mother tuber of Juvenile | 30.68 |