Detail information of GWHGAAEX011451/evm.TU.scaffold_38.15
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|17231249|ref|NP_487797.1| | 4.00E-19 | cellulose synthase catalytic subunit [Nostoc sp. PCC 7120] |
| nr | gi|695025036|ref|XP_009399755.1| | 0 | PREDICTED: probable cellulose synthase A catalytic subunit 1 [UDP-forming] [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q6AT26|CESA1_ORYSJ | 0 | Probable cellulose synthase A catalytic subunit 1 [UDP-forming] |
| trEMBL | tr|M0SW34|M0SW34_MUSAM | 0 | Cellulose synthase {ECO:0000256|RuleBase:RU361116} |
| TAIR | AT4G32410 | 0 | cellulose synthase 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000041 | 556686 | 567062 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX011451
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF14569.5 | zf-UDP | 30 | 105 | 8.00E-40 |
| PF03552.13 | Cellulose_synt | 360 | 1078 | 0 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0030244 | Biological Process | cellulose biosynthetic process |
| GO:0016760 | Molecular Function | cellulose synthase (UDP-forming) activity |
| GO:0016020 | Cellular Component | membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 34.870 |
| SRR2545915 | Juvenile tuber | 62.290 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 37.600 |
| SRR5643514 | five period of Gastrodia elata | 40.230 | |
| SRR5643515 | five period of Gastrodia elata | 42.280 | |
| SRR5643524 | five period of Gastrodia elata | 45.630 | |
| SRR5643525 | five period of Gastrodia elata | 33.420 | |
| SRR5643528 | five period of Gastrodia elata | 33.810 | |
| SRR5643658 | five period of Gastrodia elata | 37.390 | |
| SRR5643659 | five period of Gastrodia elata | 59.060 | |
| SRR5643660 | five period of Gastrodia elata | 60.210 | |
| SRR5643661 | five period of Gastrodia elata | 58.780 | |
| SRR5643662 | five period of Gastrodia elata | 57.260 | |
| SRR5643663 | five period of Gastrodia elata | 67.900 | |
| SRR5643664 | five period of Gastrodia elata | 44.320 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 31.030 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 24.150 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 35.160 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 29.220 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 26.850 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 26.420 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 35.480 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 33.980 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 48.980 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 44.510 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 31.610 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 31.610 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 54.07 |
| Juven | Juvenile tuber | 45.58 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 55.03 | |
| Mother_Juven | Mother tuber of Juvenile | 54.70 |