Gene detail

Detail information of GWHGAAEX011454/evm.TU.scaffold_38.19

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1258	0	mRNA processing protein
nr	gi\|332806933\|gb\|AEF01213.1\|	0	PRP39 [x Doritaenopsis hybrid cultivar]
Swissprot	tr\|Q8GUP1\|CTF77_ARATH	2.00E-12	Cleavage stimulation factor subunit 77 {ECO:0000303\|PubMed:12379796}
trEMBL	tr\|F6M059\|F6M059_9ASPA	0	PRP39 {ECO:0000313\|EMBL:AEF01213.1}
TAIR	AT1G04080	0	Tetratricopeptide repeat (TPR)-like superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000041	610863	636385	+

Transcript Sequence
>GWHTAAEX011454 ATGGAAGATAATCAGCTGGTGATTACCAAAGCTCCCAGCATGACCGAATGTTCGACAGTTATAGATGCTCCTTCAACCGACTGCAAGACTGATTCAGAGCAAGTGACTGAAAATTTGGACACATCGGCATCATTAGCTGACGCAATTGTTCTTTCAGTACAAAATTCAAATCCCAGCAATGAAAATGCCTATGTTCATGACACAAGTTATAGTGCAGCCCACGTTGCCAATGGGAGTGTGGCTTGTGATTCTACGTCTGTTGACATTGTTTCTGTTGCTACTGATAGCCTTGTTAGTACTGAAGTGAATATGGCTGTTCCCACTCATTCAGTCAGTTATGATTCAATGAATGAAGTTCCATGTGAAATTGTTGATTACCAGTCGTCAGAAGTTGTTGAATATAGTGGTGCACCAGATATTTCTGGTGAACATACCGGGGCACTACTTTTTGAGGAAGTGTATTCTGCTGAGGAAGAGAGATTATGGAATGCTGTTAGGCTTAATTGTTTGGATTTCAATGCATGGACCTCCCTCATCGAGGAAACTGAGAAAGTTGCAGAGACTAATGTTTTAAAGATTCGGAAAGTCTATGATGCTTTCTTGGCTGAATTTCCCCTGTGTTTTGGCTACTGGAAGAAGTATGCAGATCATGAGGGTCGTCTTGACAGTGCTAACATGGTTTTGGAAGTTTATGAACGTGCCATTCTAGCTGTCACCTACTCTGTGGATATATGGTTACACTATTGTGTATTTGCAATATCAACTTATGATGATCCAGACGTCATACGAAGGCTGTTTGAAAGGGGTTTGGCTTATGTAGGAAGTGATTATCTTTCCTACCCATTGTGGGATGAGTATATTAGATATGAAGAATCACAACAAGCGTGGACTAATCTAGCCATGATTTATACCAGAATACTAGAGAATCCTATTCAGCAGTTGGATCGCTATTTCAACTGCTTTAAGCAATTGGCTGCGAGTCGAGCTTTATCTGAAATAAGAACTGCTGAAGAAGCTGCATTACTTGCGTCTGCTGTGGTGATCAACGTTCATGGTGTTCGGGGAGAGGTTTGTCCTGATGGTGTTGAGGAAACTTCTAAACCCGTAAGTGCTGGCTTAGCAGAAGTCGAGGAGTTGGAGAAGTATATTCAAATTAGGGAAGATATGTATAGGAAAGCTAAAGAGTTCGATTCTAAGATCATTGGTTTTGAAACAGCTATTAGAAGGCCATACTTCCATGTCAGGCCTCTTGACGATCCTGAACTTGAGAACTGGCACAATTATTTGGATTTCATTGAAAGGGGTGATGATTTTAACAAGGTTGTCAAGTTATATGAACGATGCTTGATTGCATGTGCCAACTATCCTGAATACTGGATCCGCTATGTGCTATGCATGGAAGCTAGTGGGAGCATGGAGCTTGCCAGCAATGCTCTGGCTAGAGCTACCCAAGTTTTTGTGAAGAAGCAACCGGAGATTCATCTTTTTGCTGCTAGATTCAAGGAACACTGTGGAGATATTTTGGGTGCACGCTCGGAGTACGAGCTTCTTTATTCAGACACATTACCGGGTTTGTTAGAAGCAATATTGAGACATGCGAACATGGAGTATCGTCTGGGAAACAAGGAGGATGCCTTTTCTATATACGAGAAGGCTATTGCTGCAGAACAGGAAAAGGATCAATCTCAAACCTTGCCAATGCTTCTTATTATGTACTCACGCTTCTTGTATTTGGTTGCTGGAGATGCTGAAAAAGCAAGGGACATTTTTTCTGGAGCTTTAGAAAATATACAATTATCAAAACCTATTCTTGAGGCTGCCATTCATTTGGAATCAATTCTGCCTTTTCCAAAGCGTATTGAATATATAGATTTACTGGTTGAGAAGTTCGTTACTCCTAATACTGAGAATTGCTTCATGGCAAGCTCAACCGACCGAGAGGATATATCATGTATATTAATGGAGTTCTTGGATCTCTTTGGAGGTGCTAATTCGATAAAAAAGGCTGATGACCGGCATGCGTCACTGTTTCTTCGGCAAAAGAGCACGTTGGCATCTAAGAAACGTCGTGCAAATGATTTCCTAGCATCAGAAAAAACAAAAGTAGCAAAGAATGCCCCTTTGCCTACTCAATCTGTCATGGGTGCCTACCCTAATCCTCAAACTCAGTGGCCAGTTGGTTATGAACAAAAGGTTCCTTCTTGGCCCCAAGGAAATCTGCAAACACAGGGGCAAACTTGGAATCAAGGGTATCCATCACAGGCTGGATATGGTGCTTATAGTTATGCAAATTACGGCCAGCCCCAAATGTCTACGTCGGTAACTCAAGGTGTAACACATGGCGGCACCTATACTCCATCCTCAAGTTATTCAGTTCAGGCCTATCAGCAGGCCTATGCAGTGCCACCTGCTACAGCAGCAGCAACAGCATCTGTGGCAGGATATCCCCAGCAGCCTGTGTCTACCGCCACCCAGCCATACTATACTGCCAGTTATTATTGATTACCGTATTTTGTTGCATTTTAGGCCTAAGTTCTTCTCGCTTTTTAATTGAATCGAATGCTTTGCATCTGAGGGTTGTAGAGACTGCAGAGAGACAGCCTTTCTGAAGCGAACGCTGACAGAAGTGCTGAATGTTTTTGACAAAAGTGCCGAATCTAGATTCTGAAAAAATTTCTTATTGTCGTGTAAACTCTAGTGAAAGCCTTTAAAAGAAAGCTAGTTGTATTTAGTAGAGATTGTGATTGATGTTCACTGTTGAAGGTCTAGTAGAGATTACTAGTATTTTGTTCTTTGTACTTAAGCCCGGTCCGGTTTAGGGATGAACGGCTACCTAATTTTAAAATATAATTTGCATGTAATGATTAATGGGATCTAAGTGTTCATGTACGTATATGCTTGCATGCATGCGTACGTGCATACATTGATTAATGTGTATTGCTATCACAATGATAAAGTATGTTTGATTTTTTCTTACTTAGCTTGATGATAAGTTTTCCCTTCATAATTGAA

Network for GWHGAAEX011454

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006396	Biological Process	RNA processing
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	45.720
SRP064423	SRR2545915	Juvenile tuber	56.000
SRP108465	SRR5643513	five period of Gastrodia elata	49.920
	SRR5643514	five period of Gastrodia elata	49.080
	SRR5643515	five period of Gastrodia elata	47.310
	SRR5643524	five period of Gastrodia elata	48.450
	SRR5643525	five period of Gastrodia elata	47.020
	SRR5643528	five period of Gastrodia elata	39.480
	SRR5643658	five period of Gastrodia elata	44.850
	SRR5643659	five period of Gastrodia elata	59.080
	SRR5643660	five period of Gastrodia elata	60.530
	SRR5643661	five period of Gastrodia elata	54.480
	SRR5643662	five period of Gastrodia elata	56.060
	SRR5643663	five period of Gastrodia elata	63.970
	SRR5643664	five period of Gastrodia elata	65.380
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	56.090
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	51.330
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	59.450
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	56.400
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	64.080
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	63.940
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	60.920
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	63.290
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	53.290
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	56.850
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	50.350
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	50.350
SRP279888	Gastro	Gastrodia elata tuber	77.03
	Juven	Juvenile tuber	58.45
	Mother_Gastro	Mother tuber of Gastrodia elata	59.97
	Mother_Juven	Mother tuber of Juvenile	55.04