Gene detail

Detail information of GWHGAAEX011455/evm.TU.scaffold_38.20

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG4197	8.00E-95	FOG: PPR repeat
nr	gi\|743878406\|ref\|XP_010908166.1\|	1.38E-126	PREDICTED: pentatricopeptide repeat-containing protein At2g15980 [Elaeis guineensis]
Swissprot	tr\|Q9XIM8\|PP155_ARATH	2.00E-95	Pentatricopeptide repeat-containing protein At2g15980
trEMBL	tr\|A0A059AMT7\|A0A059AMT7_EUCGR	4.00E-113	Uncharacterized protein {ECO:0000313\|EMBL:KCW55307.1}
TAIR	AT2G15980	8.00E-95	Tetratricopeptide repeat (TPR)-like superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000041	639558	646806	+

Transcript Sequence
>GWHTAAEX011455 TAGTAACCGAGGTCGGCGTAGCCCAGGGATCGCCGACCCTTTCACCTTCGATTCCCCTTTGTTCGGAGCAGCCAACGGTTGCCGATCCTTCAACCTTTGATCTTTGCATTTGCTTTCCGATTCTTCATTTGTTCTCCACCGGTGCAAGGAGTCGCCGACGCCTTCTTACTCACGCAGCAAGCGCCGGTCTCCTTCTATTCGGCCTGTGAGCCGCCTTCACTCCGCGGTCGAGCACCCCACCTTGTTGGCCGAACATCAGTGAATGCTAGCAGTCGCCGAGCCTGCTGCCAGACCTTCCCCCGCCGCTGGCCGATCCTATGCAGATCGCCATTAAGCTAAATCTTTACAAAAATCAAATCCCGACAGCAGCTCAAACAACAATCATTCCTCGATTGAAGATGATGTCAATGGCGATCCGATGCCAAACTTGCCTCTTTCGTCTCCCATTCTCTCCTTCGCTCTCCCATTTTTGCTCCTCCACCTCGCTGAAAATCTTTTCTGTCGACATCACTGACAATTCTCTTGTGAACACTACTGTGTCTATCCTCAGCTCCCATCGCTCTCGATCCCGCTGGAACTTCCTCAAATCGATCCTTCCATCATCGGGTATTTCCCCCTCCGAATCCTCCGCTGTCATCCTCCGTCTTCGCAACAACCCCCGATTAGCCTTACGATTTTTTCTATGGTCCCGCGACCGCTCCCTTTGCCTCCACACTCTCACCTCCTATGCCACCATCATCCACACCCTCGCCCGTTCACGCCTCCGCTCCCTCGCCCTCTCCCTCATCCGTGATGCCATTCGTTCACATCCCGATGCCTCCCCTTCCTCGCTGCTCCAAACCCTAATTCTAACTTATAGGCCCTGCGACTCGGCCCCATTTGTCTTCGACCTTCTCATTCAAGCCTATCTCCACTCCAACAACCTTGGCCACGCCCTCTCCATCCTCCGATCCCATCGTGGCCCCATCCTCACATCCACCTCCAATTCCCTCCTCCGCACCGCCGCCAGGATCCATGGATCCAATGCCGCCATTGATCTCTTCCACGAGATCTTCCTGGCGGAAACTCCCTTCCACCCGCGTCCTAACCCCCAAACATTCAACACACTTATCCTCGCATTGTACCGTGATGGGAGGGCTGATTCAAAAGTGATTATGACTGAGATGAATCGATTTGGCTGCGAACCGAACAGGTTTACATATAATATTCTGATGGCGGGTTGCTTTGACACAAAGGAAGCACAAAGGATCTGGAATGAAATGAAGGCGAAAGGGATCAAACCTGATGCGATGGCATACAATACTCTTATGAGATGGTATTGCGAGTCCAGGGATATGAGGATAGGAAAGGAGCTTTATCAGGAGATGGTGATGGAAGGGGTCGACGTGACAGGGACAACGATGGAAATTTTGATTCGAGGGTATTGCTTGTCCGATGATGTGACGGCGGCAAAATTGGTGTACAAGGATATGACTAGGAGAGGGTTGTCAGCGGGGGATGAGATTGTGGAGGTGTTGATTGAGGGACTATGTGGGAAGCAGATGATTGAAGAAGGATTGAGGGTGTTGCGGGATGGAAATCAGAGGAGGAGGAGGAGTTATGGTATGATTATAAAGGGATTGTGTGAAGATGGGAGAATGGAAGAGGCGGTGAAGCTGCAGGCGGAGATGGCAGGGAGAGGAATGGGTGCCTGTACGGAGATTTACGAAGCCTTTATTTGTGGGTATGAGAAGGTTGGGGAGTTTGAGAAGGTGGAGATGTTAAGGAAGGAAATGGCTCATATGCGAGCTCGAGGAGAAGGGGATTGATTGATCTGGGGATTAAACAATGTGTTTGTTTAAAGAATTGAATTGATATGGGTTCATGAATGCCAATTTTCCATGATAATCACACATTGAAGATTAAAGACCACCCTAGAAGAGAAGGAAGAACAAAAGAAGAAAATGGCATGGAAGAGCTACAGTACAATGCTTGACTTGCAGTAACTACTTTGGAGATTTGATTTACAGAAGTTCTTATAATAGATGTTAACTTGTTGACGATGTGTAATTAAAGAGAAGAATTGAAAATTTCAATTTTGTATTTCTACAATGACGATCTCAAAGCCATTTTATTCTCCACCAACAAATGTTGTCGAATCAACACAAGCAATTGATGAAGGAATGTCTACAATTCAATTAAGCGAGAGTATAGATTCTTTCTTTGATGGTACTTCAACTCTAAGATGTTCCTTCCATAAGAGTATACTACAAACAGGAAGCTCAATGAGGTCATGACTTCTAATATATATACATTAAGTAAGTTCAACAAATCTTAGAAAGGCTTCAAGGACAATAAACTGCAATGTATTTGTCACGTCAATGAAAGCAATGTTTGGAACATTTGATGAGCTTGAATCATGATTCCATACATGCAATGAAGTTGGTAAGGCAAGTAGAATGAAGTATGATGTTACATTTAACTATTAAACTCATGATGCCACTTTTATTTATCATGAATTTATTACAAAGGCATTCTTTATTTACATGATTGCCAAATTTGTATATAATGGATTGTCGATGCAAAAACTTTAAAAAGGTTCACTAAATATGTCAATGAATAAAATGAATTGGTTGACAGCATCGATAAGGAAAGATATGATATTCTATCTGTTTAGAATTACGGGTTTTTGAAATGACCTTCAGGAGAAATATGAGACCATGTTGTTTACATATACTTACAAATACAACAACTCTTTCATGTACCATTGAAGGTGGTGTCAACCTTCAACATATGGATGAAGAAAAGATAGGCTATCAAAGAAGAGAAATGCATGCCTCTTTTTGGATTGTTTTGGATGCTTATCACCAAATGATTCAGGAAATAGTTGTCAGATGTGTGATGTGATAATTTATGAGTCAATGTAATAGCTGAATATGGCTTATTTAGTCTTTGTAATATCTATGTAACCTTTTGTTTGGGTTTGTTTAATATTACGTGTTAGTGTTTGGGATTGAGTATATTACTTGCTTTTATGTTTGAGATTGAATATGCTAATGAATTATCTATTTGTTTTTAGGATCG

Network for GWHGAAEX011455

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13041.5	PPR_2	256	302	2.70E-08
PF13041.5	PPR_2	322	370	5.20E-10
PF12854.6	PPR_1	427	451	9.50E-06
PF01535.19	PPR	463	486	0.34

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	6.600
SRP064423	SRR2545915	Juvenile tuber	5.960
SRP108465	SRR5643513	five period of Gastrodia elata	7.860
	SRR5643514	five period of Gastrodia elata	7.180
	SRR5643515	five period of Gastrodia elata	7.540
	SRR5643524	five period of Gastrodia elata	6.850
	SRR5643525	five period of Gastrodia elata	6.090
	SRR5643528	five period of Gastrodia elata	4.570
	SRR5643658	five period of Gastrodia elata	5.330
	SRR5643659	five period of Gastrodia elata	7.500
	SRR5643660	five period of Gastrodia elata	7.880
	SRR5643661	five period of Gastrodia elata	8.150
	SRR5643662	five period of Gastrodia elata	8.010
	SRR5643663	five period of Gastrodia elata	8.370
	SRR5643664	five period of Gastrodia elata	6.320
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	5.810
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	9.450
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	5.300
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	6.310
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	6.820
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	6.400
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	5.470
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	4.650
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	4.700
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	4.240
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	6.000
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	6.000
SRP279888	Gastro	Gastrodia elata tuber	7.44
	Juven	Juvenile tuber	11.78
	Mother_Gastro	Mother tuber of Gastrodia elata	7.53
	Mother_Juven	Mother tuber of Juvenile	9.52