Gene detail

Detail information of GWHGAAEX011460/evm.TU.scaffold_38.25

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG1835	Uncharacterized conserved protein
nr	gi\|672196603\|ref\|XP_008776846.1\|	PREDICTED: LOW QUALITY PROTEIN: nuclear pore complex protein Nup205 [Phoenix dactylifera]
Swissprot	tr\|F4KBW6\|NU205_ARATH	Nuclear pore complex protein NUP205 {ECO:0000303\|PubMed:21189294}
trEMBL	tr\|M0TGA1\|M0TGA1_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr7P10130_001}
TAIR	AT5G51200	Protein of unknown function (DUF3414)

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000041	786146	899304	+

Transcript Sequence
>GWHTAAEX011460 GTTTTTCTATAATATTCTTTCGTATTTTTATTAGGGACGTTAATGATTCTGCGGCACACAAGTTTTTGGATTGAAAACCCCCGCGTTATTAGTTCCAACAAAACCCCGCCTTAGGGTTTTACTTTTAATTTCTGAGCATAATCAGCTCAGCTCTGCTCACCTCCGCGACGCTTCAGTTCCGCCCCGTTGATCCTCAGTCCTCATTAGTGATTATATTTCAGTAGAGCCAGAGGAGGGAAGTGAAGAGGAGAAAACAGGATAACAGTGAGAGATCACCATTACGATAGACAAATCGCTTGAAGAAGAAGAAGACATGTCCTCTCCGCACGAGTTATTGTCTATCATCAATTCAGCGCTTTCTGGTCCCAACTCCCCGACGCCTCACCAACGGATACAGCTTTTGCACTGTTTTCGTTCTTCCGTTCATCTTTTCCAGCCACTCCTCTCCTATGCGGGTCCTAAGCCATCAGACAGATCTCAGGTGCAGTCCAAGGAAGTCAGACTTTTTGACTCCCCGCTTATACCGCTCGATGACACGGATATTCACATTGCTTTGAAACTGAGTGACGATCTGAATCTTAATGAAATTGAGTGCGTTAGTCTACTTGTTCGGGCTAACAAAGAGTGGATTCTTTTTGGGAGAGAGCCACTAGAGATATACCGTCTTGCTGCTGGCCTCTGGTACATGGAAAGAAGGAATATTATAAATTCCTTACACATCCTTTTACGGGCTGTTGTACTTGATCAAGGGCTTGAAGTTGATCTCTTGGCTGATATTCAAACCTATCTAGAAGATCGTTTTGACTCTGGGCTTAGGCAAAGGCTTATTACACTCATAAAGGAATTAAATCGGGAAGAACCAGCTGGCTTTGGTGGTCCTCATTCTGAACACTTTGTCATTGACTTCAGAGGAGCTCTTGTCGAGCGTAAAGAAATTGTTACTCAGGAAAGATTACTTCTCAGCCACTGTCTTGTCTTATCTGTGCTTGTGCGACGAATGAATCCAAAAGATGTAAAAGATGTACTTGCAGTTCTTCGAGATTGTGCTGTTGAATCTGATGGGAGTGATAGCGCTATAAAATTAAAGATTACTATAAGTTTAATGTTCTCTCTCGTGATCTCTTTTGTATCTGATGCTTTGAGTTCAAATCATGGGAAGATATCTTTTTTATCCCATGATGCCACCTTCAGAAAGGAGTTCTATAATTTATTAATGACACTGGGAAACAACCCAAATGTTGAAGGGTTCATAGATGTTGTTAGATTTGCATGGGCAGTACATCTTATATATACTCAGAATCAGGGTGCTGCTTGGGAGGCCTCTCCAGATTTAGAATCAGTGGATTTAACAAATATTTATACTTGCCTGGAATCTATCCGCTCAAGAAATATGTTTCAGTTTCTACTTGTTAAAGTTCTCCAAAATCCATCCTGCAAGAATGAAGATGAAGATATTTTTTATGTGTATGTTGGATACACGCACAAACTGATGATGTGCTTTCTTTCACACCCACTTACAAGAACCAAGGTGAAAGAAATGAAAGAGAAAGCTATGAGTTCTCTTGATCCATATTTGTATCCAAAATCAGATGAACTTATGAATGGTACTGATCTGCTACACACCAGGGGGGTTTGTCATCCATTTGTTTCAATATTGAAGCTGGTCTGTGAAATATATGAAAGCCAACCAGATCTGTTAGTTGGAAATGAAGATTTGTGGACATTTGTTTATTTTGCTGGAGAAGATCATACAAACATACCAACACTTGTGGCTTTTCTTGGAATGCTGGAGACTTTGGCTTCAACCCAGGAAGGTGCTTCAAAAGTTTATGAGCTGATCAATGGTAAAACGTTCCGGAGAGTTGGCTGGGACACCTTATTTGATTGTTTGTCTATTTATGATGGGAAATTTAAACAATCTTTCCAATCATCTGGAGATCCTTTACCTGATATTCAGGAGGGTGATGCACAGGCACTGGTTGCTTATCTAAATGTTTTGCAGAAGGTTGTAGAAAATGGAGATCCTATTGAAAGGAAGACGTGGTTTCCAGATATTGAACCTTTATTTAGGCTTCTTAGTTATGAAAATGTTCCCCCATACTTGAAAGGGGCACTTCGCAATGCAATTTCCTCTTTCATTGGAATTTCTCCAGTTTTCAATAATACTATTTGGGGTTATCTTGAAAAATATGATCTTCCTGTTGTTGTAGCTCCACCAATTCGCACTAGCAGCCTTCAGTTGCCAGCACAAGTTTATGACATGCAATTTGAGCTAAATGAAGTAGAAGCAAGAATGGAAAGGTATCCATCAACAATTTCTTTCGTCAACTTGTTAAATGCACTTCTTTCCCAAGAACGAGATGTAAGTGATCGTGGACGAAGGTTTGTCGGAATCTTTAGATTTGTTTATGATCATGTCTTTGGACCTTTTCCTCAGAGAGCTTATGCTGATCCCAAGGAAAAATGGCAACTAGTTATTTCTTGCTTACAACACTTCCGTTTAATCTTGAACATGTATGATGTTCGAGATGAAGATATTAATGATTCTATAGAGATATCCGGACCATCGAGCGCTATTCCCTCCACACTTGAAGTGCAGGTTCCTGTATTAGAGTTGTTAAAAGACTTTATGAGTGGAAAAATTGTTTTTCGCAATGTTATGGGTATCATATTATTGGGTGTAAACACTGTCATGAATGATCGAAACAGTCAAACATATGGACTTCTGTTAGAGAAAGCCGTACTTCTTTCTTTGGAAATTATAATTCTTGTTTTTGAAAGAGATCAGTTACTTACTGAGCATTGGAGGCCATTATATCAGCCTTTAGATATTGTATTGTCTCAATATCATGATCACATAGTTTCTCTTCTGGAGTATGTTCGTTATGACATTCAACCTCAAATTCAGCTTTGCTCAATAAAAATTGCCAGCATTTTAAGCTTAAGAATGCCTGGACTTGTGCAATTGTTATTGAAAGCAAATGCGGCAAAGTATTTAATTGAGGATTATGCTGCTTGTCTTGAAGCACGCTTTGATGAGCCATTAGTTGCTGATAACACAAAAGATGACCCTGGTGTTCTTATATTGCAGCTTCTTATTGATAATATTTGCCATCCAGCTCCTAGTCTAACACATTTACTACTTAAGTTTGATATAAATGGTCCAGTGGAAAAGACTTTGTTGCAACCAAAATACCATTTCAGTTGTTTGAAGGTTATTCTCGATACTTTAGAGAAGCTTTTAAAGCCCGAATTGAATTCCTTACTGCATGAGTTTTGTTTTCAGCTTTTTTATGAATTATGCCTAGATCCTCACACTTCTGGCCCTGTGATGGGTTTATTGAGTACTAAGAAGTACCAATTCTTCTCAAAGCACCTGGATTCTGTTTGTATTGCCCCACTACCAAAACGAACTAGCAATCAGGCTCTACGTATTAGCACGCTCCATCAGAGAGCATGGCTGTTAAAGCTGCTAGCTTTTGAACTGCATTCTGCTGATATGGCTGAATCCTCACACAGAGAGACTTGCATAGCTATTCTTGCCCATGGTTTTGCTCAATTCTCTGGTGAGAACTACAGTGATAATAATTCAGCAAAAACTATGGATACACATCTTTCTGGTTTTTATCACGGAACTGGCAAAGTTAAGGCTTTGCAACTTCTTGAAATTGTTCAATTTAAGCCTCCTGACATTGCCTTGAAATATCCCCAGTTCTTTGTGAAAATGAAGTACGATTCTCAGGTTGAAGATGTACTTAGTAATCCGACAACATCTGAGATGGGTGGTGTCTATTATTATTCTGAGCGGGATGACCGGTTAATTGATATTAATACATTTAATGACAGGCTATGGAAGATCCTTAAATTCTCCAGCTCACAAGGTGTAACTCAGTTCAATGAAGCAAAGAAAGGGGAAATGAGGGATGCCGTTCAGCAATTACTGAGGTGGGCTTGGAAGTACAATAAAAACCTTGAAGAACAAGCAGCCCAACTACATATGTTAAGGGCTTGGTCTCATTTTGTAGAGGTATCTATATCCAGAAAGCTTGTGTTTATTGAAGATCACTCCCAATTACTATTTGAGTTACTTGATGCTTCATTGAGTGCATCAGCCTCTCCAGATTGTTCTTTAAAGATGGCACTGATACTCACTAACGTGGCACTGACCTGTATGGCTAAACTACGGGATGAAAGATTTTTGTGTCCCGGAGGTTCTGATACAGATAGTGTAACATGTTTGGATATTATTTCGGTGACACAACTACCAAATGGAGCCTGTCACTCTATACTTTTTAAGCTAATAACGGCCATTCTGAAGAATGAATCATCAGAAACACTAAGAAAACGTCAGTACGCATTTCTTCTTATTTACTTCCAATACTGCCGGAGTATACTTGATCCTGAAATCCCAACTTCAGTACTGAACTACATATTTCGTGAAGAACAAGGGGATGATGAGTTATATTTGCAAAAGATTGACAAGGAGCATGCTGACCTCATACGAGCGAATTTTTCCATACTAAAGAAAGAGGCTCAAACTGTCGTTAATGTGGTCTCAAAGGATGCCATTGAAGGTAGTGAAGCCTCCAGGGCAATAGCAGTTTATGTGTTGGATGTATTTATCAGTATTGATCAGGAGCAGTTTTTCCTGAACCTACTTCAGAGCAAAGGATTTCTGAAGTCATTTTTACAAGACGTCAGCAACTTTGTTTGCAAGGATGATAGGTCTTCTTTAGAAACTTTGCAACGTTTATGCACCCTTGAAGCTCAACTAGGTTTGCTGCTAAGGATCAGCAACCAGTACAACAGGCATGGGGCTCAAATTCTGTTATCCTCTGGGGCTTTGGAGCATCTCGGGTCATGTAGAGCCATGGATTTGCAAATCAAGGGACTTGCAAGACATGGTAGTATTACGTTAGGAAGATGCCAATCCGGAGAGCTTGAAAAAAATCATCTTCTTGTGACTCCAATTTTGAGACTGGTTTCTAGTTTGACATCACTTATAGACTACTCGGAATTTCTTGAGATTAGGAATAAAATTGGACGAGAGATTAGGGATTTTGTAAAATCCCATCAATTAGTTTTTGATCAGATATTAAGAGGTGATATCTCAGTAGCTGATGAAGGCAAACTGGAACGGATTAATCTTGTTATTTTGATACTTAGCAGGATTTGGCCTTATGAAGAAAATGATGAGTATGGTTTTCTACAAGGGCTTTTCAGCATGATGAATTTTGTTTTTCATTTTGATGCTGGCGTCAGTGGATTTTATCGATTTTCAGAATCAGTTGAGAACAAGCGGAACTCAGAATTGATCATACTCAGACTATGCTTTAGCCTTCTCTCGTATCTATATATCCTGGTAACTAAGAAGTCGATCAGGTTACAGGTCTCAGATAGCTCTGGTGAGCAGCAGCAACCTACTTTACTCACCTTAATGCATCTTCTTGATTATCTGACTATAGCCTTGGTGAAGGCTGGAGAAGAAAAAATCTTACTGCTGAACAAGATTCAGAACATCAATGAATTATCAAGGCAGGAAGTTGATGAGATAATTTATGTTTGCATGAGGCACAATTGTCTCTCCTTTGATGATAACATTCGTAAAAGGAGGTACATTGCGATGGTTGAAATGTGCCAAATGAGTGGGAATAGGGATCAGCTCATCATTCTGTTGCTTCAACTTGCTGAATGCGTTTTCAATATTCTTCTCATTCATTTTCAGGACAGTAACGCTAAATTGGGAGATCTGACCGTTTTATGTGAGAAGCTGCATACAAATTTAGAAAAGCTAGAACAGTTGAGAGAGGATAAGATTGGGCACAATCTAAAGCTTTTTCACAGAACAATCAGCGTTCTGAAGGAAATAGCAGTAAAAAATATGGCATTCTGATGCACATATTGCTGTATTTTTCAGTTTTTTTTGCTTAAATATCACACTCTGTAACCGGATTCTTGTGAGAATAATAAGCTTGCAATCTAATTATGGCTCCAACTAAAGGTGTAATGTAGGCAATTCGCAAGCTCAAGAATAAGTTGGGCTTGGTTAATGATTAAATCTCATTGGTCAATATAACAAGTTATATTATATTTATTAACATGCTGACTAGATATGCTGGCCAGTTGTGCTAGCCTGAGCTTGAGTTTGGTTCCTGAGCTCGATAAATCAAGTTTGGGCTACAACCTTTTATTTGAAAACCATCCGGCTCATAAAAATTTGGCTCTGGAATTTCATTTTTGTTGTTTACTGA

Network for GWHGAAEX011460

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF11894.7	Nup192	7	373	1.60E-12
PF11894.7	Nup192	466	1619	2.30E-95

Protein Sequence

>GWHPAAEX011460
MSSPHELLSIINSALSGPNSPTPHQRIQLLHCFRSSVHLFQPLLSYAGPKPSDRSQVQSKEVRLFDSPLIPLDDTDIHIALKLSDDLNLNEIECVSLLVRANKEWILFGREPLEIYRLAAGLWYMERRNIINSLHILLRAVVLDQGLEVDLLADIQTYLEDRFDSGLRQRLITLIKELNREEPAGFGGPHSEHFVIDFRGALVERKEIVTQERLLLSHCLVLSVLVRRMNPKDVKDVLAVLRDCAVESDGSDSAIKLKITISLMFSLVISFVSDALSSNHGKISFLSHDATFRKEFYNLLMTLGNNPNVEGFIDVVRFAWAVHLIYTQNQGAAWEASPDLESVDLTNIYTCLESIRSRNMFQFLLVKVLQNPSCKNEDEDIFYVYVGYTHKLMMCFLSHPLTRTKVKEMKEKAMSSLDPYLYPKSDELMNGTDLLHTRGVCHPFVSILKLVCEIYESQPDLLVGNEDLWTFVYFAGEDHTNIPTLVAFLGMLETLASTQEGASKVYELINGKTFRRVGWDTLFDCLSIYDGKFKQSFQSSGDPLPDIQEGDAQALVAYLNVLQKVVENGDPIERKTWFPDIEPLFRLLSYENVPPYLKGALRNAISSFIGISPVFNNTIWGYLEKYDLPVVVAPPIRTSSLQLPAQVYDMQFELNEVEARMERYPSTISFVNLLNALLSQERDVSDRGRRFVGIFRFVYDHVFGPFPQRAYADPKEKWQLVISCLQHFRLILNMYDVRDEDINDSIEISGPSSAIPSTLEVQVPVLELLKDFMSGKIVFRNVMGIILLGVNTVMNDRNSQTYGLLLEKAVLLSLEIIILVFERDQLLTEHWRPLYQPLDIVLSQYHDHIVSLLEYVRYDIQPQIQLCSIKIASILSLRMPGLVQLLLKANAAKYLIEDYAACLEARFDEPLVADNTKDDPGVLILQLLIDNICHPAPSLTHLLLKFDINGPVEKTLLQPKYHFSCLKVILDTLEKLLKPELNSLLHEFCFQLFYELCLDPHTSGPVMGLLSTKKYQFFSKHLDSVCIAPLPKRTSNQALRISTLHQRAWLLKLLAFELHSADMAESSHRETCIAILAHGFAQFSGENYSDNNSAKTMDTHLSGFYHGTGKVKALQLLEIVQFKPPDIALKYPQFFVKMKYDSQVEDVLSNPTTSEMGGVYYYSERDDRLIDINTFNDRLWKILKFSSSQGVTQFNEAKKGEMRDAVQQLLRWAWKYNKNLEEQAAQLHMLRAWSHFVEVSISRKLVFIEDHSQLLFELLDASLSASASPDCSLKMALILTNVALTCMAKLRDERFLCPGGSDTDSVTCLDIISVTQLPNGACHSILFKLITAILKNESSETLRKRQYAFLLIYFQYCRSILDPEIPTSVLNYIFREEQGDDELYLQKIDKEHADLIRANFSILKKEAQTVVNVVSKDAIEGSEASRAIAVYVLDVFISIDQEQFFLNLLQSKGFLKSFLQDVSNFVCKDDRSSLETLQRLCTLEAQLGLLLRISNQYNRHGAQILLSSGALEHLGSCRAMDLQIKGLARHGSITLGRCQSGELEKNHLLVTPILRLVSSLTSLIDYSEFLEIRNKIGREIRDFVKSHQLVFDQILRGDISVADEGKLERINLVILILSRIWPYEENDEYGFLQGLFSMMNFVFHFDAGVSGFYRFSESVENKRNSELIILRLCFSLLSYLYILVTKKSIRLQVSDSSGEQQQPTLLTLMHLLDYLTIALVKAGEEKILLLNKIQNINELSRQEVDEIIYVCMRHNCLSFDDNIRKRRYIAMVEMCQMSGNRDQLIILLLQLAECVFNILLIHFQDSNAKLGDLTVLCEKLHTNLEKLEQLREDKIGHNLKLFHRTISVLKEIAVKNMAF

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14310	NUP205, NUP192	RNA transport	map03013

Gene Ontology

GO term	Ontology	Name
GO:0005643	Cellular Component	nuclear pore

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	24.740
SRP064423	SRR2545915	Juvenile tuber	30.460
SRP108465	SRR5643513	five period of Gastrodia elata	8.660
	SRR5643514	five period of Gastrodia elata	9.400
	SRR5643515	five period of Gastrodia elata	8.550
	SRR5643524	five period of Gastrodia elata	9.460
	SRR5643525	five period of Gastrodia elata	2.420
	SRR5643528	five period of Gastrodia elata	1.700
	SRR5643658	five period of Gastrodia elata	2.050
	SRR5643659	five period of Gastrodia elata	9.230
	SRR5643660	five period of Gastrodia elata	12.250
	SRR5643661	five period of Gastrodia elata	9.230
	SRR5643662	five period of Gastrodia elata	9.740
	SRR5643663	five period of Gastrodia elata	11.270
	SRR5643664	five period of Gastrodia elata	10.360
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	13.540
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	10.530
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	13.170
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	14.990
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	17.240
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	19.330
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	16.090
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	19.670
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	15.180
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	16.130
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	10.560
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	10.560
SRP279888	Gastro	Gastrodia elata tuber	14.20
	Juven	Juvenile tuber	14.35
	Mother_Gastro	Mother tuber of Gastrodia elata	5.79
	Mother_Juven	Mother tuber of Juvenile	8.34