Detail information of GWHGAAEX011465/evm.TU.scaffold_38.30
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|166366485|ref|YP_001658758.1| | 3.00E-19 | WD repeat-containing protein [Microcystis aeruginosa NIES-843] |
| nr | gi|672171047|ref|XP_008805599.1| | 0 | PREDICTED: E3 ubiquitin-protein ligase COP1 isoform X1 [Phoenix dactylifera] |
| Swissprot | tr|P43254|COP1_ARATH | 0 | E3 ubiquitin-protein ligase COP1 |
| trEMBL | tr|M0SG79|M0SG79_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr3P20130_001} |
| TAIR | AT2G32950_2 | 0 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000041 | 1014346 | 1042008 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX011465
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13923.5 | zf-C3HC4_2 | 55 | 92 | 4.50E-10 |
| PF00400.31 | WD40 | 461 | 498 | 0.0027 |
| PF00400.31 | WD40 | 547 | 583 | 0.00046 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K10143 | RFWD2, COP1 | Ubiquitin mediated proteolysis | map04120 |
| p53 signaling pathway | map04115 | ||
| Circadian rhythm - plant | map04712 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 28.610 |
| SRR2545915 | Juvenile tuber | 23.560 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 19.080 |
| SRR5643514 | five period of Gastrodia elata | 17.930 | |
| SRR5643515 | five period of Gastrodia elata | 16.440 | |
| SRR5643524 | five period of Gastrodia elata | 16.470 | |
| SRR5643525 | five period of Gastrodia elata | 18.380 | |
| SRR5643528 | five period of Gastrodia elata | 16.380 | |
| SRR5643658 | five period of Gastrodia elata | 25.810 | |
| SRR5643659 | five period of Gastrodia elata | 16.510 | |
| SRR5643660 | five period of Gastrodia elata | 19.900 | |
| SRR5643661 | five period of Gastrodia elata | 20.340 | |
| SRR5643662 | five period of Gastrodia elata | 21.920 | |
| SRR5643663 | five period of Gastrodia elata | 20.990 | |
| SRR5643664 | five period of Gastrodia elata | 24.500 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 26.960 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 24.320 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 22.320 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 32.820 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 31.770 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 38.880 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 26.780 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 28.790 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 17.550 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 20.100 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 18.740 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 18.740 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 29.00 |
| Juven | Juvenile tuber | 37.67 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 33.68 | |
| Mother_Juven | Mother tuber of Juvenile | 47.21 |