Detail information of GWHGAAEX011466/evm.TU.scaffold_38.32


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG44271.00E-76E3 ubiquitin protein ligase
nrgi|743759711|ref|XP_010933410.1|3.95E-113PREDICTED: E3 ubiquitin-protein ligase UPL7 [Elaeis guineensis]
Swissprottr|Q9SCQ2|UPL7_ARATH4.00E-77E3 ubiquitin-protein ligase UPL7
trEMBLtr|A0A061F0L7|A0A061F0L7_THECC2.00E-91E3 ubiquitin-protein ligase UPL7 isoform 6 {ECO:0000313|EMBL:EOY08059.1}
TAIRAT3G530901.00E-76ubiquitin-protein ligase 7

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000004111107121165365+
Transcript Sequence

Network for GWHGAAEX011466

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module8

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K10588UBE3B Ubiquitin mediated proteolysis map04120

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms41.220
SRR2545915Juvenile tuber22.730
SRP108465SRR5643513five period of Gastrodia elata7.290
SRR5643514five period of Gastrodia elata9.740
SRR5643515five period of Gastrodia elata9.900
SRR5643524five period of Gastrodia elata9.930
SRR5643525five period of Gastrodia elata12.490
SRR5643528five period of Gastrodia elata7.720
SRR5643658five period of Gastrodia elata14.040
SRR5643659five period of Gastrodia elata8.590
SRR5643660five period of Gastrodia elata10.400
SRR5643661five period of Gastrodia elata8.660
SRR5643662five period of Gastrodia elata8.780
SRR5643663five period of Gastrodia elata10.940
SRR5643664five period of Gastrodia elata11.400
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_114.590
SRR6049655Rhizomagastrodiae_C368-T10_good_116.140
SRR6049656Rhizomagastrodiae_C368-T07_good_111.970
SRR6049657Rhizomagastrodiae_C368-T07_good_118.640
SRR6049658Rhizomagastrodiae_C368-T04_good_118.490
SRR6049659Rhizomagastrodiae_C368-T04_good_125.000
SRR6049660Rhizomagastrodiae_C368-T01_good_118.310
SRR6049661Rhizomagastrodiae_C368-T04_good_119.590
SRR6049662Rhizomagastrodiae_C368-T01_good_112.270
SRR6049663Rhizomagastrodiae_C368-T01_good_112.560
SRR6049664Rhizomagastrodiae_C368-T10_good_111.640
SRR6049665Rhizomagastrodiae_C368-T10_good_111.640
SRP279888GastroGastrodia elata tuber 6.93
JuvenJuvenile tuber8.61
Mother_GastroMother tuber of Gastrodia elata 4.70
Mother_JuvenMother tuber of Juvenile 6.87