Gene detail

Detail information of GWHGAAEX011467/evm.TU.scaffold_38.33

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG4427	E3 ubiquitin protein ligase
nr	gi\|743759711\|ref\|XP_010933410.1\|	PREDICTED: E3 ubiquitin-protein ligase UPL7 [Elaeis guineensis]
Swissprot	tr\|Q9SCQ2\|UPL7_ARATH	E3 ubiquitin-protein ligase UPL7
trEMBL	tr\|M0T6F8\|M0T6F8_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr6P12600_001}
TAIR	AT3G53090	ubiquitin-protein ligase 7

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000041	1165391	1227516	+

Transcript Sequence
>GWHTAAEX011467 ATGCTACAATATACTGATAAATTAGTACCTTCTTGTGGTTGGGCTCTTGCCAACATTATAGACCTCGTAACTGAGTGTAAAAATGATTCTGTTGACTCTGCACAGTTTATTCAGGGTTTAGATTTGATATTGTATGTTCAAGTTATAAATTTAATTTCTGAGAACCTTTTAGACTGTCTTGGAAATGCTGGAATATTTACCAGGAAGGAGCATGGATATGCAGAGATGGGTGACCATTCTTTGAAGGATGCTAGTCCCGTGAAGTGCAATGGGATAAAATTGGCATATGTAAACCTTTTAGGTCCTGTGCATCAGCAATGGCATTTAAGAAAGCTTCTTTCTTTGTTAGAGAAGAGTAAACAGGCCGAGCAAAAAAAATTTGATGCATCAAATAAGGACAGCGAAGGTGTTGGGAACTTAAAGCTAATAGATGCTGTTTACTTTTACAATTTTATGCTTAGAATATTCTCATATTTAAACCCTATCGGTGGTTCACTACCCATTCTTAACGTGCTTTCCTTCACTTCCGGGCTTGTAACCCAGTTGTGGGAAACTTTAGAACATTTCATTTTTTATGGAAAAGAATTCATGCCTCTTGAAGATCTTAGTTTAAAAGACCCTAATTGGGGCACTTGCAACAATACTAGTTTAGACAAAAAGCTAAAACTGGGTATGAAGGATACCGGAAGCAAGTTGGTTACTATATTTCAGAAAATTGCTGGGAAGTCTACTGATTTGAACACTACTCTAATTGACGACCCTTCCAGTTTATATCAAACTAATAAAGATGCACGTAATTCGTGGGATATTGAGTATATGAAGAGGGGTTCCCAAGGTATCTCAAACGATGTCTCATGCATTTTGCACCTATTTTGTGCTATATATGCACACTTGCTTTTAATCTTAGATGACATCGAGTTTTATGAAAAGCAGGTTCCCTTTAATTTACAGCAGCAGCAAAAGATCGCATCATTGCTCAACACATTCGTGTATAACTCTCTTATTCATAATACTGGACAAAACAGGAAACCTGTTGTAGATGCTGCAGTTAAGTGTCTACATTTTCTGTATGAAAGAGATTGTAGACACAAGTTTTGTCCATCCTCTCTATGGGTTGCACCAGCTGGAAGGGGCCGTATTGCAATAGCTGCAGCTGCAAGAGCTCATGAAGCTGCGCAGTCCAATTTTCCACTTGGGGATGCTTCAATTATTTCAAGCATGAGCTCTGTCCTAACCACCGTTCCTCATGTTTTTCCATTTGAAGAAAGGGTTCAAATGTTTAGGGAACTTGTTAAAATGGACAACGTTGCTAGAAGAGCAGCTGGTGAGGTATCTGCCAGTGGTCTTGGTTGTGTTGAAATTGTTGTTCGTCGTGATCATATTGTTGAGGATGGGTTTAGGCAATTGAACTCTTTAAGGTCAAGGCTGAAATCTAGCATCAGTGTGTCATTCATCAGTGAATGTGGTCTCCCAGAGGTGGGTCTAGACTATGGGGGTTTGTCTAAAGAATTCTTAACTGATTTATCCAAAACTGCCTTTGATCCACAGTTTGGCTTGTTTTCTGTGACCTCTACAACTGATGCAAATCTAGTTCCTAACGTATCTTCTAGATTATCAGACCAAGGAATGGAGATGATTGAATTCCTTGGAAGAGTTGTTGGTAAAGCTCTTTATGAAGGAATTTTGATGGAATACTCGTTCTCACTTGTTTTTGTACAGAAGCTTTTAGGGCAGTACTGCTTTTTGGACCAGCTTTCAACTCTGGATTCTGAAGTCTACAGGAACCTAATGTATTTGAAGCGCTATGATGGAGATGTGGCAGATTTGTCATTAGATTTTTCAGTTACTGAAGAAGTTTGTGGAAAGAAGATAGTAAGGGAGTTGAAACCTGGTGGTAGAAATCTCTCCGTCACTAATGAGAATAAGTTGCAATATATTCATGCGATTGCTGATTATAAGCTGAATTGGCAAATGCTTCCACCTGCAAATGCCTTTTATAGAGGTCTCACAGATCTTATTGCACCATCGTGGTTGAGCTTATTCAATGCAAACGAATTTAATCAGTTACTTTCAGGTGGAAAGCATGATTTTGATGTCAATGATTTGAGGTACAACACAGCATATACTGGTGGTTATTCTGAGGGAAGCCGGACAATTAAAATGTTCTGGGATGTTGTTAGAGGATTCACATCTTGTGAACGGTGCCTGCTCCTTAAGTTTGTGACAAGCTGTTCAAGATCTCCACTACTTGGGTTCAAGTATCTGCAACCTTCGTTTACAATTCATAAGGTTGTTGCTGATATTCCTATTTGGGCCACAATAGGAGGTCAGGATGTGGATCGTCTTCCCTCAGCTTCTACTTGCTACAACACATTAAAGCTGCCGGCTTATAAACGGCTCAGTACTCTCAAAAGCAAGCTGCTGTATGCAATTACTTCAAACACTGGCTTTGAACTTTCTTAG

Network for GWHGAAEX011467

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00632.24	HECT	507	820	1.30E-89

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	HECT

KEGG pathway

KO	Enzyme	pathway	mapID
K10588	UBE3B	Ubiquitin mediated proteolysis	map04120

Gene Ontology

GO term	Ontology	Name
GO:0004842	Molecular Function	ubiquitin-protein transferase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	52.930
SRP064423	SRR2545915	Juvenile tuber	34.730
SRP108465	SRR5643513	five period of Gastrodia elata	11.840
	SRR5643514	five period of Gastrodia elata	13.580
	SRR5643515	five period of Gastrodia elata	13.640
	SRR5643524	five period of Gastrodia elata	14.080
	SRR5643525	five period of Gastrodia elata	16.870
	SRR5643528	five period of Gastrodia elata	16.000
	SRR5643658	five period of Gastrodia elata	18.990
	SRR5643659	five period of Gastrodia elata	13.800
	SRR5643660	five period of Gastrodia elata	12.360
	SRR5643661	five period of Gastrodia elata	11.830
	SRR5643662	five period of Gastrodia elata	11.990
	SRR5643663	five period of Gastrodia elata	14.880
	SRR5643664	five period of Gastrodia elata	14.260
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	21.340
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	7.040
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	20.350
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	28.180
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	27.300
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	35.290
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	26.920
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	29.290
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	16.850
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	19.850
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	16.690
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	16.690
SRP279888	Gastro	Gastrodia elata tuber	19.53
	Juven	Juvenile tuber	16.73
	Mother_Gastro	Mother tuber of Gastrodia elata	18.63
	Mother_Juven	Mother tuber of Juvenile	20.89