Gene detail

Detail information of GWHGAAEX011468/evm.TU.scaffold_38.35

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|294673104\|ref\|YP_003573720.1\|	9.00E-20	hypothetical protein PRU_0336 [Prevotella ruminicola 23]
KOG	KOG1839	0	Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3
nr	gi\|743867540\|ref\|XP_010905341.1\|	0	PREDICTED: clustered mitochondria protein homolog [Elaeis guineensis]
Swissprot	tr\|F4J5S1\|CLU_ARATH	4.00E-88	Clustered mitochondria protein
trEMBL	tr\|M0RGE0\|M0RGE0_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr10P08140_001}
TAIR	AT4G28080	0	Tetratricopeptide repeat (TPR)-like superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000041	1258707	1278021	+

Transcript Sequence
>GWHTAAEX011468 CGGGAACAAACTAAAACGAACAGTCAATTTTCTCGATTCGGCCGAACTCTCCGATCCAATCAAATCTTCTCAAACCGCGCGCCTCCGTGCGCGAACCGTGAGCCAACCGGGCCCGACCGGCCGGTCGAATGGCCTCGCCCCTTCCGTGCATCGGGCAAACCCATGCCCGCCACGTGGCTTATCGGCCACCGCTCAGTTCCCTTCCGTCCTCTAGTCTCTTTCCTCGAGCTCCCTCCTGACAGCGCGGGCCCATCTGATGCGATATAAAGAGCAGAGAAAAAGAGGGCTGCAGCAAAAAATCCTGAGAGGGCGAAGCAGAAATCCGCTTCCTTATCTCTTAATCCCCTTCTTATATCCATTGCTTCTTTCCTCCTTCTAGCCTCGTCTAAAAAGATAGCCGAAAAAGAAGAAGAAGGAGAAGAAGCGCAAATATGGCTCCAAAAGCCAGCCGCGGAAAGGGGAACAAAGGCAAAGCAGAGAAAAAGAAGAAAGAAGAAAAAGTGGTTCCCAGTGTCGTCGATATAACTGTAATAACACCATACGATACTCGAATTACACTGAAGGGAATATCCACTGATAAGATAGTGGACGTGAGGAAACTGCTGGGCTCAAATGTGAAGACTTGCCACATAACAAATTACTCGCTAGTGCACGAGGCCAGGGGACAACCGTTGCAAGGCGGTGTGGAAATCATGTCTCTCAAACCCTGTGTACTAAGATTGGTGGAAGAGCCCTATGAGACCAAAGAGCAAGCCGAGGCACAGGTGCGCAGGTTGCTTGACCTTGCAGCTTGCACGACTTTCTTCGCAAAGCATCAAACGAGGGATGGAAAGGCTCGAAAACTGGTGTCACCTTCTTCAGTCTCTGCTTCTTCTCCGGCCTTCTCGACTTCGGCCGCCATTTCTGTCCCTGATGAATCCCAGGAAGCTTCCGTTCCCGCAATTTCGAACAAGTTTGACATGGCGGCCATCCAGCCGCCTCCCAAGCTCGGAGATTTCTATGATTTCTTCTGCTTCTCCAACTTACCCTCTCCCATTCAATTTATAAGGCGGCGCGAAGCAGATCTTTCCGGGAAGAGCCGAGAAGGGGATCATTTTGAGATCGAGGTTAAGGTATGCAATGGGAAATTACTGCATGTGATGGCTGGATTTAAAGGTTTCTGTAGTGCTGGGAAGCATTCCATTCAAAGCCATTCTCTTGTGGATTTACTGCACCAGCGCAGCAGGGCATTTGCTACTGCATATGATTCTGTTATGAAAGCTTTTGTTGATCATAACAAGTTCGGGAATCTTCCGTATGGATTTAGAGCAAACACGTGGCTTGTCCCTCCAGTTTTTGCTGAAACTCCTTATAAACTCCCCTCGTTACCAGCAGAAGATGCCGTGTGGGGAGGTGATAGTCATGGGTGTGTGCTTGAGGGACATTTTGATGACAGAAAATGGTCGAAAGATTTTTCGACTTTGGCTGCATTTCCATGCAGAACTGAAGAAGAAAGACTTGTTCGGGACCGTAAAGCTTTTTTACTTCACAGCCTTTTTGTAGAAACAGCAATTTTGAAAGCTGCTTCAGCAATTCGCAAGCTTATTGAGTCCAATTCAAGTGCTTCCCATAATGATTTGCATGGCGCTGTCTTGTATGAGGAAAATGTAGGGGATCTAAACATAATTGTAAGGAGGGATTTTCCTAATGCGAGTGAAAAGCTTGATGAGAAGGTTGATGGGACTCAAATGCTGAATATATCTTCAGAGGAGCTTGCAGTGAGAAATATTCTCAAAGGCCTAACAGCTAATGAGAATGTGGTTGTCAATGACACTGCTACAATCGGTAATGTCATTGTAAAACATTGTGGTTATGCTGCCACTGTTAAAGTGTTATATCATGGGGATCATAATGATTATGTGCAACATGTTCTTGAAATAGCGGACCAACAAGAAGGAGGTTCTAATGCTTTGAACATTAACAGTTTACGAGTACCATTGCACAACTTATCTAATAATGAGACAATTTTGGGATGTCTGACTTCTTGTACTGGTTGTACCGATGTATGCGATGGACGGCTCTTAGTTCGCAGAATATTTAGTGATAGTTTGTATGATCTAGAAAATGCTTTTGGTTTTAAGGAAAAGGCATTCAGATGGGAACTTGGAGCTTGCTGGCGCCAACAATTGCAGAAAAATAAGGATTCTGCATTTGAAGATAATAGAAATGAGGAAGACACTTTTGTTGAACCAATCGTTAAAGGCTTTGGAAATCAATTTGAGCAGTTAAAGAAAATAAGAAAGAAAAGGGATTCCCTCCATTGCCTATCTATCAAGGAAAATTCTAATGTCGATGGTATGCAGCTGAGAGATACAAGTAATGAAGAGAAACGAGAGCAATTAGAAATAAACGGGAACTATGAATTGAAGAAACGATTAACTGAAGAAGCTTTTAATTTCTTGAAAGATTCAGGCACTGGTCTTCACAAAAAGTCTATAGAGGAGCTTACCAAGATGGCACATATATATTATCACGACGTTGCTCTACCAAAGCTGGTAGCAGATTTAGCATCGCTTGAGCTATCTCCTGTTGATGGAAGAACCCTTACGGATTTCATGCATACGCGTGGCCTCAAAATGCGTTCGTTGGGACGCATTGTTGAGCTTGCAGAGAAGCTCCCGCACATACAGTCACTCTGTATTCATGAGATGGTTGCTCGAGCATTCAAGCACTTAATTAGAGCCGTGGTTGCTGCTGTTAAGAACTTCTCAGATATCCCCTGTGCAGTTGCTACAGCACTGAATATCCTGTTAGGATCTCTAAAAGAGAAAGACACAGACTCTGTCTTAATTAATGATCATGCACTCAAGATGAAGTGGACGAGGGTTTTTATCTTTAAAAGGTATTCTTGGAAGCTACGAAATGAGTTTCAATATTTGAGGAAGTTTGTACTTCTCAGAGGGCTTTGTCAAAAGGTTGGGCTGGAGCTTGTTGCTAGAGATTATGACATGGATAGTTCAAATCCTTTTGAAAAGTTTGATATTATTAGCATCGTTCCTGTATATAAACATGTCGAGTGCTCATCCATAGATGGTAGGAATTTATTGGAGTCATCGAAGGCAGCTCTGGACAAGGGAAAACTAGAGGATGCTGTTAACTACGGCGCAAGGGCACTCTCAAAAATGATAGCGGTGTGTGGTCCCTACCATCGAATGACGGCCAATGCTTACAGTCTTCTTGCTGTTGTTTTGTACCATACTGGAGATTTCAACCAGGCAACCATTTATCAACAGAAGGCGTTGGATATTAATGAACGGGAGATTGGCCTTGACCATCCAGAAACCATGAAAAGCTATGGGGATCTTTCTGTGTTTTACTACCGGCTACAGCACATTGAATTAGCTTTGAAGTATGCCAATCGAGCACTATATCTTCTTCATTTTTCATGCGGATTGTCACACCCAAATTCTGCTGCAACCTATATTAATGTTGCTATGATGGAAGAAGGAAGGGGGAATGCTAATGTCGCTTTAAGATATCTGCATGAAGCCCTCAAGTGCAATCAGCGGTTATTAGGGGCTGATCACATACAAACGGCTGCAAGCTATCATGCTATTGCTATAGCGCTTTCAATGATGGAGACATATTCCCTCAGTGTGCAACATGAACAAACCACACTGCGGATACTTCGGGCTAAGCTGGGGTCTGAAGATTTGCGTACTCTGGATGCGGCGGCATGGCTTGATTATTTTGAATCTAAAGCTTTAGAGCAGCAAGAGGCTGCACGAAAAGGCATCCCTAAACCTGATGCATCAATTGCCAGTAAAGGTTATCTAAGTGTTTCAGACCTCCTTGACTACATAAATCCTGATCCAGACATGAGAGAAAAGGAGATGCTGAGAAAGCAGAAGAATATCAAGAGCAATATCAAAATTGGACATAGGCAGTTAGTAAGAAATCCAGATGATGAGTACCACATGGGTAGTTTGACAAATCTTGTCCAAGTAAACACATCCAATCATGAGGAGAAATCTAAAGAAACCCACCTTGGGGTATTTAAGGAAGGTAGTGAGATTCCTTTGGCATCTGTAGAAGAGTCTTCGGATGAAGGGTGGCAGGAAGCCAGCTTCAGAGGAAAGTCTGGTCACATGCGGCGAAAATTTGGTTCTAGGCGGCTTGCCCTTTCAGAGTTAGATGCCAGCAATTCGGATTCAAATTTTACTGCAAATGTCCGTTACAAGATTAGAACTACTTCACCAAACTCTAAATCCAACTACAGTAAGGCAATGCTCCCTTCAGATGCCTCTTCTGTTGGAGAATTGTCTAATGCTTCAAGTTCAGCTGGAAATGATGCTAATAAACCTGAAACGGTCAATCCTGATGGAGAACCTTTTTCTGAACCCCACCATAAAGGTTCGGGTACTTGCAGGTTCTCTACCAAGTTCGTGTCCTACAAAGAAGTAGCCGTATCACCTCCTGGTACTGTCTTAAAACCGGTAATATCAGGGCAAACCGTACAGGTGTCGGATGAGCTAAACAATGCACATGAGCAAAACCGTGCAGTTGAGAATCTCAAGGTTGAAAATGAGGCACGCAATGAGGATTTGGAAGACTTTCCTAGCAATGAAAGCGAGAAAGACTCTCAGTCAAATGAAGCGGTGGCAGCGCATGCAGAGGAAAAAGCTTTTACTAGTTCGGACGAGGTTCAGGACTTTCTGGATTCAAAGAAAACAGCGACCAATATAAGCAAACTCTCGGCTTCTGCGCCTCCCTTTAATCCTGGGTCTTTGCACTCAATACCTCCTCCCTATGGCTCTATTCCAGCTGGCGATATGTATAATGTGAGAAACGTCCGGCAAACTGTGCCCCGCCAGATTCTGGTAATTCCTTCTCCAGAGTCGATAGATCTTAGAGTCCCTTGTGGTCCCAGATCCACTCTTTACCACTACAGAACTGGCCATCCTTCCAGAAGGAAGGTTGATTATACTAGTTGTAACAGCAGTGCTTCGAATAGAAATAATGGCATTACCCCGACAATCATGAATCCTAATGCTGCCGTGTTTGTTCCGGCCAAGACATGTCAACAAGACACTGAAAAGGCTGTCGCCGTCTCTGAATATACCGAAAATTCTGACAATGCTTCTCTTAAGAGTGAAACTATTGATGTTTTCCACTCACAAGAGAAAACAGGAGTTGAGAAACCAGATAAAGAAGCGATCGACGGCACAAATCGGAGAAATGATACTAAGAGTTTTGATAAAAATGAGCTCGCACGGCAGATTCTTCTTAACTTGGTGGTGAGATCCTTTCAGAATGGTCTAATATCTTCATCTGAGAGCGATGCTACTTCAGGCTCAGATAAAAACATGCTCAGGGAAAACAATGAGCATCACTCAGAATCTTCAGCAAATGTGCCTATCGAGTCTAGAGACATCAACAATAAAAAGCAAGATGCTGAAGGATACACTCTCATCTCCAATAAGAGGAGAGGCAGCAAACATCATTTCTCCGGTGCAGCGAATGGCTTGTATGCTCAGCAATCTATCTGCACTTAGACAATGCTATGTTTTTATCCGATTGAAAATAATTTCAAATTTTCTAATAAAATACTTAGTGCTCGGATTGAACTGAAGTGGTGGTCTCTGTTGATTGGGCCGATTTTCGGGTTTGTGAATCCTGGTTTTTCAAGTGATTGGTGAGAAAACTGCATGTACATATAAACCTTCGCAGGATCTTTTTTAGCAGGTTACAATATTTTAACTTGTTTTATTGTTCAGTATTTGCGAAACTCTATTGCTGTTATTGCTGGCTTAAAGAGGTGCTCTTGCGCTTGTGCACATCTTCAGCTTTGATTTGTAATAATGCCATTAATAGCACCTGGCTTGTTAAAAAACTTTGAACTTTATTGATTTCATGCTGAGTCTAGAATTAAATTTTGTTTCTGGAATTGAAGAAGTGTTCATATAATAAGCTGCACTGGCAACTGAAGATCATGACTTGGGCATATGTACTGTACTTACTGTGAAAGTAAAGATAGTGCTTTAT

Network for GWHGAAEX011468

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module3

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF15044.5	CLU_N	48	118	1.70E-06
PF12807.6	eIF3_p135	710	852	2.00E-23
PF13424.5	TPR_12	922	992	1.50E-12
PF13424.5	TPR_12	1007	1080	4.80E-10

Protein Sequence

>GWHPAAEX011468
MAPKASRGKGNKGKAEKKKKEEKVVPSVVDITVITPYDTRITLKGISTDKIVDVRKLLGSNVKTCHITNYSLVHEARGQPLQGGVEIMSLKPCVLRLVEEPYETKEQAEAQVRRLLDLAACTTFFAKHQTRDGKARKLVSPSSVSASSPAFSTSAAISVPDESQEASVPAISNKFDMAAIQPPPKLGDFYDFFCFSNLPSPIQFIRRREADLSGKSREGDHFEIEVKVCNGKLLHVMAGFKGFCSAGKHSIQSHSLVDLLHQRSRAFATAYDSVMKAFVDHNKFGNLPYGFRANTWLVPPVFAETPYKLPSLPAEDAVWGGDSHGCVLEGHFDDRKWSKDFSTLAAFPCRTEEERLVRDRKAFLLHSLFVETAILKAASAIRKLIESNSSASHNDLHGAVLYEENVGDLNIIVRRDFPNASEKLDEKVDGTQMLNISSEELAVRNILKGLTANENVVVNDTATIGNVIVKHCGYAATVKVLYHGDHNDYVQHVLEIADQQEGGSNALNINSLRVPLHNLSNNETILGCLTSCTGCTDVCDGRLLVRRIFSDSLYDLENAFGFKEKAFRWELGACWRQQLQKNKDSAFEDNRNEEDTFVEPIVKGFGNQFEQLKKIRKKRDSLHCLSIKENSNVDGMQLRDTSNEEKREQLEINGNYELKKRLTEEAFNFLKDSGTGLHKKSIEELTKMAHIYYHDVALPKLVADLASLELSPVDGRTLTDFMHTRGLKMRSLGRIVELAEKLPHIQSLCIHEMVARAFKHLIRAVVAAVKNFSDIPCAVATALNILLGSLKEKDTDSVLINDHALKMKWTRVFIFKRYSWKLRNEFQYLRKFVLLRGLCQKVGLELVARDYDMDSSNPFEKFDIISIVPVYKHVECSSIDGRNLLESSKAALDKGKLEDAVNYGARALSKMIAVCGPYHRMTANAYSLLAVVLYHTGDFNQATIYQQKALDINEREIGLDHPETMKSYGDLSVFYYRLQHIELALKYANRALYLLHFSCGLSHPNSAATYINVAMMEEGRGNANVALRYLHEALKCNQRLLGADHIQTAASYHAIAIALSMMETYSLSVQHEQTTLRILRAKLGSEDLRTLDAAAWLDYFESKALEQQEAARKGIPKPDASIASKGYLSVSDLLDYINPDPDMREKEMLRKQKNIKSNIKIGHRQLVRNPDDEYHMGSLTNLVQVNTSNHEEKSKETHLGVFKEGSEIPLASVEESSDEGWQEASFRGKSGHMRRKFGSRRLALSELDASNSDSNFTANVRYKIRTTSPNSKSNYSKAMLPSDASSVGELSNASSSAGNDANKPETVNPDGEPFSEPHHKGSGTCRFSTKFVSYKEVAVSPPGTVLKPVISGQTVQVSDELNNAHEQNRAVENLKVENEARNEDLEDFPSNESEKDSQSNEAVAAHAEEKAFTSSDEVQDFLDSKKTATNISKLSASAPPFNPGSLHSIPPPYGSIPAGDMYNVRNVRQTVPRQILVIPSPESIDLRVPCGPRSTLYHYRTGHPSRRKVDYTSCNSSASNRNNGITPTIMNPNAAVFVPAKTCQQDTEKAVAVSEYTENSDNASLKSETIDVFHSQEKTGVEKPDKEAIDGTNRRNDTKSFDKNELARQILLNLVVRSFQNGLISSSESDATSGSDKNMLRENNEHHSESSANVPIESRDINNKKQDAEGYTLISNKRRGSKHHFSGAANGLYAQQSICT

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	50.380
SRP064423	SRR2545915	Juvenile tuber	57.540
SRP108465	SRR5643513	five period of Gastrodia elata	15.170
	SRR5643514	five period of Gastrodia elata	13.920
	SRR5643515	five period of Gastrodia elata	19.750
	SRR5643524	five period of Gastrodia elata	12.600
	SRR5643525	five period of Gastrodia elata	30.170
	SRR5643528	five period of Gastrodia elata	21.780
	SRR5643658	five period of Gastrodia elata	40.640
	SRR5643659	five period of Gastrodia elata	61.940
	SRR5643660	five period of Gastrodia elata	69.380
	SRR5643661	five period of Gastrodia elata	57.280
	SRR5643662	five period of Gastrodia elata	101.420
	SRR5643663	five period of Gastrodia elata	93.840
	SRR5643664	five period of Gastrodia elata	125.160
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	38.780
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	27.020
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	48.900
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	36.050
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	43.480
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	39.150
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	34.470
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	58.950
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	38.050
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	36.250
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	18.490
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	18.490
SRP279888	Gastro	Gastrodia elata tuber	140.44
	Juven	Juvenile tuber	29.24
	Mother_Gastro	Mother tuber of Gastrodia elata	20.44
	Mother_Juven	Mother tuber of Juvenile	25.02