Detail information of GWHGAAEX011473/evm.TU.scaffold_38.41
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|269125465|ref|YP_003298835.1| | 5.00E-171 | glycerol kinase [Thermomonospora curvata DSM 43183] |
| KOG | KOG2517 | 0 | Ribulose kinase and related carbohydrate kinases |
| nr | gi|573941041|ref|XP_006652916.1| | 0 | PREDICTED: glycerol kinase-like [Oryza brachyantha] |
| Swissprot | tr|Q9M8L4|GLPK_ARATH | 0 | Glycerol kinase |
| trEMBL | tr|J3M205|J3M205_ORYBR | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:OB04G34300.1} |
| TAIR | AT1G80460 | 0 | Actin-like ATPase superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000041 | 1356846 | 1360343 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX011473
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00370.20 | FGGY_N | 23 | 286 | 1.70E-65 |
| PF02782.15 | FGGY_C | 294 | 492 | 7.60E-60 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K00864 | glpK, GK | Metabolic pathways | map01100 |
| Glycerolipid metabolism | map00561 | ||
| PPAR signaling pathway | map03320 | ||
| Plant-pathogen interaction | map04626 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006072 | Biological Process | glycerol-3-phosphate metabolic process |
| GO:0005975 | Biological Process | carbohydrate metabolic process |
| GO:0004370 | Molecular Function | glycerol kinase activity |
| GO:0016773 | Molecular Function | phosphotransferase activity, alcohol group as acceptor |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 19.480 |
| SRR2545915 | Juvenile tuber | 23.960 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 44.340 |
| SRR5643514 | five period of Gastrodia elata | 42.040 | |
| SRR5643515 | five period of Gastrodia elata | 50.630 | |
| SRR5643524 | five period of Gastrodia elata | 46.360 | |
| SRR5643525 | five period of Gastrodia elata | 53.990 | |
| SRR5643528 | five period of Gastrodia elata | 61.940 | |
| SRR5643658 | five period of Gastrodia elata | 71.090 | |
| SRR5643659 | five period of Gastrodia elata | 40.410 | |
| SRR5643660 | five period of Gastrodia elata | 38.350 | |
| SRR5643661 | five period of Gastrodia elata | 40.570 | |
| SRR5643662 | five period of Gastrodia elata | 43.910 | |
| SRR5643663 | five period of Gastrodia elata | 39.010 | |
| SRR5643664 | five period of Gastrodia elata | 45.430 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 41.490 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 31.140 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 41.830 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 44.870 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 36.630 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 41.270 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 47.550 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 42.450 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 42.480 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 41.160 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 42.990 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 42.990 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 48.79 |
| Juven | Juvenile tuber | 60.77 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 107.30 | |
| Mother_Juven | Mother tuber of Juvenile | 109.30 |