Gene detail

Detail information of GWHGAAEX011475/evm.TU.scaffold_38.43

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG2643	1.00E-159	Ca2+ binding protein, contains EF-hand motifs
nr	gi\|743876135\|ref\|XP_010907507.1\|	0	PREDICTED: calcium uptake protein 1 homolog, mitochondrial-like isoform X1 [Elaeis guineensis]
trEMBL	tr\|M0T9E4\|M0T9E4_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr6P22960_001}
TAIR	AT4G32060	1.00E-159	calcium-binding EF hand family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000041	1394496	1401339	-

Transcript Sequence
>GWHTAAEX011475 CACTCACAGTTTTGTCTCCGATCTAAGGCGATTTCGATGACTCTGCGATCCACCAGCTGCTTGTGGTCTCTTGGCAGATCGGGATTTCGGCGGTTTTCGAGCGTGTCCGGACTGGCTGCGGGCGAGGGAGATTCGGTGCCTACAGGCAGCGGTCTTGCTTCGTTGGCGAAGGCTGCCGCAGGGATCTTTGCATTGGGAGGCTCGGGATTGGGGCTGTGGCTTATGCCCGATTCTTCAGATTCGAGGTTAATCGGATGCAGCGACTCGATCGGCGCGGATAAGAAACCTAAATTTCTGTTAGCAGATTCATTTCGGAGAAGGGTATTCTTTAAATATGAAAAACGATTGAGGCTGCAAAGTCCACCTGAGAAGATATTTGAGTACTTTGCATCTATCCGGAGGCCGGAAGGAGAGGTGTTCATGTCTCCAGCGGATTTGATGAGAGCGGTGGTTCCCGTGTTTCCTCGATGTGAGCCAAGTGTGGTTAGAGAAGGATTTCTTAGAGGTGAGCGGAAGCCTCACGTATTCTACTGTGCTTCATCCCCACTCTTCCTGCTCTTCGACACTAATAATGACGGGTTAATTTCCTTTCCAGAGTACATCTTTTTCGTCACATTGCTCAGCATCCCCGATTCAAGCTTCAGCGCGGCTTTCAAGATGTTCGACCTTGACAATAACGGAGCGATTGAAAGGGACGAGTTCAAGAGCGTGATGGCATTGATGCGGTCGTGCAACAGACAGGGGGCATGCCATAGGAACGGGCTGCGCACCGGCCTCAAAGTTCGGGACTCTGTTGAGAACGCTGGCCTTGTGGAGTACTTTTTCGGCAAGGATGGAAAGGGGCGGCTCCGATACGACAAGTTTGTTCAGTTCCTCACGGATCTGCACAACGAGATCCTGCGCCTGGAATTCGATCACTATGATGCGAAGTCGGAGGGGACGATCTCAGCCAAGGATTTCGCTCTGTCGATGGTGGCGTCTGCGGACATCAATCACATAAACAGGCTTCTTGACAGGGTCGACGATCTTGGCCAAGATTCCCGTCTGAAGGACATGCGCATCTCCTTCGAGGAATTCAAGGCGTTTGCTGATCTGCGGAAGAGGCTGGACCTGCTGTCCTTCGCCATCTTCAGCTTCGGAAGAGTCAGCGGTGCCTTGGCAAGGGACGATTTCATCAGAGCCACTTCCCATGTCTGTGGGGTTTCTCTGAGCGACAATGTGGTCGATGTTATTTTTGATGTGTTCGATTGGAACCGAGACGGCAGCCTGAGCTACGAGGAGTTCTTGAGAGTGATGCAGAAGAGGGAGGCTGATGTCCAGCAGCCTGCCTCCGCCGGCCTTCTCAGGAGTTTTTTATTGCTGCCCTGATCGATTCTCCTGACCACTCCGCCCCCATTGAAGAAGATCATGAAGGAAATGGATGCACCCCTTGGATTCAAGTCTGTAATGAACATGTCGAGGCAAGAAGAAGACTGGGTGTCAAGCCTGAGGTGAATCATTGTATATATATAGATGCGTCCTTAGTACATCCTTAGCATCAAGTGAAGTGAAAGAAATGGCTAAAATGAACTCTTTTCCTGTATTTTTTTTGTTGAAATAAAAATAATTCTATTAATTTATTTGCCTTTTGGATGTAATGTGTTTCTTTTGCATTATAATGTCTAAATGAAAAATGTTATACTTACACAATCATATTCACTACTAATCAAATTTTTTTTTTCTTACATATTTGTTCAAACAAAAATGAATTGTATCAATCATATATTTACACATATAATT

Network for GWHGAAEX011475

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13833.5	EF-hand_8	171	193	0.0036
PF00036.31	EF-hand_1	203	228	9.70E-07
PF13833.5	EF-hand_8	374	423	9.40E-11

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005509	Molecular Function	calcium ion binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	36.070
SRP064423	SRR2545915	Juvenile tuber	34.590
SRP108465	SRR5643513	five period of Gastrodia elata	25.410
	SRR5643514	five period of Gastrodia elata	15.850
	SRR5643515	five period of Gastrodia elata	20.050
	SRR5643524	five period of Gastrodia elata	15.380
	SRR5643525	five period of Gastrodia elata	26.310
	SRR5643528	five period of Gastrodia elata	16.290
	SRR5643658	five period of Gastrodia elata	22.550
	SRR5643659	five period of Gastrodia elata	19.370
	SRR5643660	five period of Gastrodia elata	19.030
	SRR5643661	five period of Gastrodia elata	18.450
	SRR5643662	five period of Gastrodia elata	18.960
	SRR5643663	five period of Gastrodia elata	20.030
	SRR5643664	five period of Gastrodia elata	30.230
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	46.360
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	34.840
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	37.910
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	52.340
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	52.680
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	70.820
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	59.810
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	49.540
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	27.740
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	49.740
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	33.140
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	33.140
SRP279888	Gastro	Gastrodia elata tuber	40.29
	Juven	Juvenile tuber	112.42
	Mother_Gastro	Mother tuber of Gastrodia elata	105.91
	Mother_Juven	Mother tuber of Juvenile	177.09