Gene detail

Detail information of GWHGAAEX011483/evm.TU.scaffold_38.50

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG4732	Uncharacterized conserved protein
nr	gi\|743769806\|ref\|XP_010915196.1\|	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105040389 [Elaeis guineensis]
trEMBL	tr\|F6I0W4\|F6I0W4_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB60580.1}
TAIR	AT4G38440	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000041	1501439	1533094	-

Transcript Sequence
>GWHTAAEX011483 AAAATTTCAAACAATTAGCAGCCGCTTGATGGCGGATTTCGACTCCTTGCTCTCACATCTTAGCCTAACCAAAACCCTATTATCTTTTCCTTTTCTTTCGGCTGACGAGCGCAAGAGCTCTAGTCGGCGCACGGAGCCGCCGGCCTCCTCTCCATGGGCCGGCCGAGGACGGACCGTCCCTACCGCTCGCCGATCTCTCCATACTCTCTAGCTCATTCGTTCGGCGCAAGGCCTTCAGCCGCAAAGCGTCGATTCCACCCTACTTCCACTAGTGAAATCGTCTAAGCCTCAGAAAGTGTCGCTTCCACCCTCCTTCGACGAGTGAAGTCATCAAAACTTCCTTAAGGCGCAGAAAGTGTCGCCTCTGCCAAGCTTCGATCATATAAGCCGAACCTTATTTCCTTCCACTGAAGATCTTGTCAACCTCCCTTCATAAGCCGAGCTCTTTCATCCGTCAGCCTCTCTCTCAAGCCGAGCTGCAGTCCTCTCCTTACATGGCCGAACTCCTCCTTGGCCGAGGACAGTCCTTCCCCGCCGCTTATCTATCCTATGTCGATTGCCAATTAGACTTCTCTCCTAAAATCCCATCAAGCCACATTATCGAGAACTAACATGAAGCCACAGAGAGCCAAAAAGAAGCTCCCTCTGAAGTCTAAAACCGCTAATTTCTCCTCTATGAATCCACAAATTGAAGAAATTTACAATTCAAAGGGCCTTGTCGGTAGAATAATTGAAAAGGGGTTTTCTTCCTCTTCATCATCTAATCCCTTAAATTCTACCAGCGTCTCTCTTCCTCAACCAACAATTCTTCCTTTTCCGGTCGCTCGTCACCGCTCCCATGGCCCACATTGGAATTCCTTGTCCGCAACAATGGAACAAGAAGAAGATGATGACAAGGATGTAACTGACTACAGCTTTATCTCATCCTTCGCAAGCCTTGTTGAGAGAAAGGAGAAAAAAGACCTGGATTTTAGCCAGTGGAGGGATTTCATCACTCAAAGCAGTTCTACTGTCATGCAGCCCAACGACTCCAGTTTCTCGAAACTCAACGATTCCATTGAATTGAAACCTACTGATGAAAAGAAAAAGAACATGGCAGCATTTCCACAATGGCCTAATGAGGAATTTGAGAATTTAGGTGATGAACCATGGCAGATGTTAGTGAAGGATTCCTTAGAGGAGCCAGATGTGTCTGTTAAAAGGGATAAGTCTAGCAGAAATGTTCTTGAGGTGGCTCTAGATGCAGCATCTAATTTTAGCAACGTTGGAATGGATGCACAAATGTTGATGCCGAACATGCAAGGATTTGGGTCAATCATGGAAGATATCGACGTGGAGAATCTTTCTCGTTTGAAGCAAATGTCATTGGAGGAGATTGTGAATGCACAGTCAGAGATAATTGAGAAGATGAATCCTATAATGGTAGATATGTTGAAGAAAAGGGGGAAAAAAAGGTTGGGTATCAAGAAGGTTGCTGCCTTTAGTCAGGAAAAGGATGGCCAGGATATGGCTAGTGTTCATCATGTTAAAAGTTCCAAGAATTCGGGCAAGGATAAAGCTGGAAGTGAGCCATCACCCAAAGCTACTAAGATAAATGTAAAGCCCGCAATGCATGCAGATTGGGTGTCAGCTGGACAAGTTAATAGCAACTCTTGGAATATGTGGAATGAAAGAGTGGAGAAAGTGAGGGAGTTGAGGTTTACCTTGGAAGGGGATATTTTGGAGGCTGATTCTGTTCAGGTACTTGGTGGTTGCAAGTTCCAAGGTATTCAGCCTGATGTTGGAAATGTAGCAGAACGTGATTTCCTGCGAACAGAAGGGAATCCTGCTGCTCTAGGATACTCAATCATGGAAATGATAACTCTGACTCGAAGCATGGTACCCGCACAACGGGCATTTGCTCTAAAACTTCTTGATTCCATCCTGATTAAGGCTATGTTCAACTTGTTGAGCAATAAGGACTTGCTTGGTTCGAAAAAAGATACTGTTAGCAGTTATGTAGATTGGCAGGCAATTTGGGCGTATTCACTTGGCCCTGAACCTCAGCTGGTGCTATCGTTAAGGATTGCTTTGGATGATAACCATCATTCTGTTGTTTTGGCTTGTGCCAATGTACTTCAATCCATTTTGAGCTTTGACATGAATGAGTACTTCTTTAATGTTGCTGAGAAAGTTCCTACTTTTCACAAAGTTCTTTGCACTGCTCCTGTCTTCCGGAGCAGAACTGAAATTGATAGTAGCTTTTTGCAAGGTGGATTTTGGAAGTATAGCACAAAGTCATCAAATATACTACCATCAAACATAAATAAGGAGAATGAAGATCAAGGGGAACATACTATTCAAGATGACATTGTTGTAGTTGGTCAAGATATTGCTGCAGGCCTTGTTAGGATGGGTATACTTCCTAGAATATGCTATCTTTTGGAGATGGAACCCGTTTCTGCTTTAGTAGAATGCCTTATTTCAGTGCTAATCGAACTGGCTAGGCATTCCCCAGCATGTGCAAATGCTATCGTTCAATGCCCAAGGCTTGTTCAAAATATTGTTGACATTTTGACTAGACAAGGCATGATGGAGCTTCCATGCCAGATAAAAGCAATAACTGTTTTAAAGGTTTTGTCTCAAATGGATGAGCGCTTGTGTTCATATTTTGTGAAAGGTGGTGTTTTTCAGAAAGTAATGTGGCACTGGTACAGAAATTTTAATACAATCGATCATTGGGTGGAATCTGGAAAGGAGAACTGTAAGCTCACTGCTGCTCTGATGGTTGAACAGCTTCGCCTCTGGAAAGTTTGTATTAGCTATGGATATTGTGTAGAGTACTTTGCTGATTTTTTCCCCAGAATGTGTCTATGGCTTACTCGGCCCACATTCAGCAAACTGATTGAATTTAATGTACTAGGTGAGTTTTCTCATATTTCCAGGGAAGCATACCTTACTTTAAGTGCTTTAGTCAAATGTCTTCCATTTCTTCATTCGATGGATCAACTAGCCATGGAAGACTTGGACATCGAAGATGATGTTACCAAAAATTGGTCTTGGAGCCATGTCATTCCGATGATAAACCTGGCTATAAGTTGGCTATCTTTAAATGACATCCCCTATGTTTTTTCAATTAATCATTGCTTTGAAGAAAATGATCTCTATAATGCATCAGCAAGCAGCATGCTTTGGGTTATTTCGGCTGTACTGCACATGCTTTGTTGTGTTTTTGATAGAATGAGCCCTATAAGAACAGATGATGGGAGAAACTCAACAAGCTTGCCATGGTTGCCAGAATTTGTTCCTAAAGTTGGCCTTGAAATTCTGAAAAATCAATTTTTCAGTTTTGCCAATTCAAGTGAAATTAATTCCAAAGGAAATGAAGGGCGTTCTTTAGTTGATGGACTTTGTTATTTAAGGCATCAAGGTAATTTTGATATGGCATTGTCTTGCCTAACCTGTCTTCATGGATTAATTCAACTTGTTTCATCAGTTGACAACTGCATTCAGAGTGCAAGGGCTGCATGTGACATACAGATTCTCGGGAAAAGTAGCTTAGATTCTGAGGGTAAGATCTTATCAGAAGGGATGATTAAATGGACTGGAGAGGGCCTAACTAGAGTGTTAGATACAGTTGGGAACTTAATTTCCTCCGAAGGGTTATTGGTACAATCTATTGAGGCATTTGGTAGGGGTGGTCCTGCCCCTGGGGTTGGTGTAGGGTGGGGCTCACCTGGTGGAGGTTTTTGGTCATTAAACATTTTACTGGCTCAAGAGGACGCCCGAGTTTTCCTAGAAATACTCAAAACCTTTCCGATTGTGCATGACAGAGATATTACTTCTGCAGAATCCCCAATTCAAGCATTTGGAAAGTCTCCTAACTCAAATAACCTTGCTTTACAGAAAGTGAAATCTGTCCTTGCAGCTTTTCTGGTCCTTGGGCCCGGAGATAAAGTTATTGCTGAGGAAGCATTAAATATATTGTTCCAACCACGTGTGTTGAAATATCTTGGCCTGCTCCTGTACCATTTTCTCCAGCTGAACAATAGTTTGAAACCATTTAAATGGAAATATGAGGATAAGGACTATTTACTCTTCAGCAAGATTCTAAAGTCTCATTTTAGAGAGAGGTGGTTAAGCATTAAGATTAAGTCAGCTGATGACAGAAAAGAGCTCAATCAAAGTAAGTCAAGAAAAAGTGCTGTTCTAGAAACAATTCATGAGGCTCTGGAGAATCATGAGGTTTCGGAACTTAATTTTAAAGACACTGCTTGTAGATCCTTTTGTATACAGTGGGTTAACCAGAGGCTGCCAGTTCCTATGCATTGGTTTCTTAGCGCAATCTGCAGCATTGGTGAACTAAAAAATTCCAACATTAATTCATTAAACGAACTTGATTTGGCAAAGGGTGGACTCTTATTTCTCCTATGTCTTGAAGTCTTGTACAGATCAGTGTTTGCTAATCAGGATTCTCCATTTTTGAATGTGTCATTAGTTTGGAAGTTACATGCCTTGTCTATGTCTCTGCATGCTAATGTGGCCATACTCGAGGACGAGAGGTCAAGGGATGTATTTGAATTAATGCAGCAATTGTATGGAAAGCAACTAGATGAATTGAGGCATAGAGAGAAGCAGGGATTTCAAGATTCTTTGCTGAATATATCTGGATTTAATGACAATCTTAGTGAAGTTTTATCTTTCCAGTCACAAATCAGCAATGGATACACTACTTTTGTTGAAAACCTGATCGAGCAGTTTGGAGCCGTTTCATATGGTGATGTAGTTTTTGGCCGGCAAGTTTCAATATATTTGCATCGCACTGTTGATATCCCCATCAGGCTTGCTGCATGGAATGCATTGTCTAATTCTCATTTGCTTGAGCTCTTACCGTCATTAGAAGAGTGCTTTTCTGAAGCTGAAGGATATTTGGAACCTCCCGAGGACAACGAAGCAATCCTGGAGGCCTACACAAAGTCGTGGTGTTCTGGTGCCATCAATCGAGCCTTTACCCGAGGCTCGCTCGGGTTTTCATTAGCTCAGCATCACCTCCACTCTTTTATTTTTGGCCCCATTTCTCTTGAAAAGCTAAGCTTTCACGACAGACTAACTAAATCCCTTCTCCGGAGTTACTCACATCATAACTCGGTCATGCTGCCTCATCTTGTGAAATATGAGCTGCCAGTGTCGCAAGATCTCCAGCTTGCGATCGAGATCGATCGGCGAATCGAACGGCTGAAGGCGACCTGTGAAGGTAATTCCTCTCTTATAGCAGTGGTTGAGATCATAAAGTCTTCCCTTTAGAAAGATTATGGCTGAGAGTATACAAGGTTGCAGTGGAGGTGGTAATTTTGTAAATATTTAAACACTTAAAACTTTTAAAGTTGTAGATTATGCTCCCAAATTTTTTGTATTCACCTCATGAGAATTATAAATATTGAAGAGTAGATTTGAAATTTTAATATTGTGATTTGTAGGGATTTTTGATATATTTTTTAAATATAAAATTTTTATAATTTTCTTGTATGTGTTCATTTCATTTGTGGTTGATCTTTAATGTACAAGCATTTATGTAAACCTTATATATAATTTTTTGAATAAAATAATTTCATC

Network for GWHGAAEX011483

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08621.9	RPAP1_N	237	281	4.50E-13
PF08620.9	RPAP1_C	360	441	2.20E-12

Protein Sequence

>GWHPAAEX011483
MKPQRAKKKLPLKSKTANFSSMNPQIEEIYNSKGLVGRIIEKGFSSSSSSNPLNSTSVSLPQPTILPFPVARHRSHGPHWNSLSATMEQEEDDDKDVTDYSFISSFASLVERKEKKDLDFSQWRDFITQSSSTVMQPNDSSFSKLNDSIELKPTDEKKKNMAAFPQWPNEEFENLGDEPWQMLVKDSLEEPDVSVKRDKSSRNVLEVALDAASNFSNVGMDAQMLMPNMQGFGSIMEDIDVENLSRLKQMSLEEIVNAQSEIIEKMNPIMVDMLKKRGKKRLGIKKVAAFSQEKDGQDMASVHHVKSSKNSGKDKAGSEPSPKATKINVKPAMHADWVSAGQVNSNSWNMWNERVEKVRELRFTLEGDILEADSVQVLGGCKFQGIQPDVGNVAERDFLRTEGNPAALGYSIMEMITLTRSMVPAQRAFALKLLDSILIKAMFNLLSNKDLLGSKKDTVSSYVDWQAIWAYSLGPEPQLVLSLRIALDDNHHSVVLACANVLQSILSFDMNEYFFNVAEKVPTFHKVLCTAPVFRSRTEIDSSFLQGGFWKYSTKSSNILPSNINKENEDQGEHTIQDDIVVVGQDIAAGLVRMGILPRICYLLEMEPVSALVECLISVLIELARHSPACANAIVQCPRLVQNIVDILTRQGMMELPCQIKAITVLKVLSQMDERLCSYFVKGGVFQKVMWHWYRNFNTIDHWVESGKENCKLTAALMVEQLRLWKVCISYGYCVEYFADFFPRMCLWLTRPTFSKLIEFNVLGEFSHISREAYLTLSALVKCLPFLHSMDQLAMEDLDIEDDVTKNWSWSHVIPMINLAISWLSLNDIPYVFSINHCFEENDLYNASASSMLWVISAVLHMLCCVFDRMSPIRTDDGRNSTSLPWLPEFVPKVGLEILKNQFFSFANSSEINSKGNEGRSLVDGLCYLRHQGNFDMALSCLTCLHGLIQLVSSVDNCIQSARAACDIQILGKSSLDSEGKILSEGMIKWTGEGLTRVLDTVGNLISSEGLLVQSIEAFGRGGPAPGVGVGWGSPGGGFWSLNILLAQEDARVFLEILKTFPIVHDRDITSAESPIQAFGKSPNSNNLALQKVKSVLAAFLVLGPGDKVIAEEALNILFQPRVLKYLGLLLYHFLQLNNSLKPFKWKYEDKDYLLFSKILKSHFRERWLSIKIKSADDRKELNQSKSRKSAVLETIHEALENHEVSELNFKDTACRSFCIQWVNQRLPVPMHWFLSAICSIGELKNSNINSLNELDLAKGGLLFLLCLEVLYRSVFANQDSPFLNVSLVWKLHALSMSLHANVAILEDERSRDVFELMQQLYGKQLDELRHREKQGFQDSLLNISGFNDNLSEVLSFQSQISNGYTTFVENLIEQFGAVSYGDVVFGRQVSIYLHRTVDIPIRLAAWNALSNSHLLELLPSLEECFSEAEGYLEPPEDNEAILEAYTKSWCSGAINRAFTRGSLGFSLAQHHLHSFIFGPISLEKLSFHDRLTKSLLRSYSHHNSVMLPHLVKYELPVSQDLQLAIEIDRRIERLKATCEGNSSLIAVVEIIKSSL

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	73.720
SRP064423	SRR2545915	Juvenile tuber	88.700
SRP108465	SRR5643513	five period of Gastrodia elata	54.620
	SRR5643514	five period of Gastrodia elata	57.150
	SRR5643515	five period of Gastrodia elata	58.410
	SRR5643524	five period of Gastrodia elata	58.400
	SRR5643525	five period of Gastrodia elata	50.090
	SRR5643528	five period of Gastrodia elata	48.890
	SRR5643658	five period of Gastrodia elata	43.030
	SRR5643659	five period of Gastrodia elata	76.250
	SRR5643660	five period of Gastrodia elata	83.040
	SRR5643661	five period of Gastrodia elata	75.460
	SRR5643662	five period of Gastrodia elata	79.510
	SRR5643663	five period of Gastrodia elata	75.850
	SRR5643664	five period of Gastrodia elata	85.200
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	61.710
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	57.780
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	61.700
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	63.120
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	71.310
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	84.610
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	73.010
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	73.770
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	55.060
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	70.660
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	58.260
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	58.260
SRP279888	Gastro	Gastrodia elata tuber	121.15
	Juven	Juvenile tuber	122.03
	Mother_Gastro	Mother tuber of Gastrodia elata	60.92
	Mother_Juven	Mother tuber of Juvenile	89.25