Gene detail

Detail information of GWHGAAEX011485/evm.TU.scaffold_38.52

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1356	0	Putative transcription factor 5qNCA, contains JmjC domain
nr	gi\|672171029\|ref\|XP_008805590.1\|	0	PREDICTED: uncharacterized protein LOC103718506 isoform X3 [Phoenix dactylifera]
Swissprot	tr\|Q9SSE9\|JMJ25_ARATH	2.00E-168	Lysine-specific demethylase JMJ25
trEMBL	tr\|W5F1D5\|W5F1D5_WHEAT	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Traes_5AL_C9FC195D1.2}
TAIR	AT1G11950	0	Transcription factor jumonji (jmjC) domain-containing protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000041	1566779	1572665	+

Transcript Sequence
>GWHTAAEX011485 CTTTTTTGCTAATTGCCGTAAACCTCCGAATTCGGCTTCAGGTTAACAAGCCGTTCAAAGTAGATCGCCTCATCATCTTCCTCACAGCTCATTTACCGAGCGGATAGAGTTGAATACAAGAAACTCGAAAATTAAAGCCGCATCGCATGATCTGATTCTTGTTTCTCCCACAGATTTAAGAGGCGAGTGGACGCAGCAAATCCAATTCACAAGTCCTGCTTCAGAAGTCCTTTGATTTGAATCTCCTTATGAGGCAATGCCGACAGCCAATTCGGCAATGGTAGATTTGAAGGAGAAGCAGGGCTCTACCCGCGCAAGAAGACCCAACAACGACTTGTTGTTTCATTATTATCGCCATGAATCGTCAGATATGGAGGAGTGCAAGGATGAAGAGCTCGACAGCGATTGGAATTCCGACGAGGAGTGCAGTAGTCCTCTGTGGAGGCGGAGTAATCTGAAGAGAAAGAAGAGGCTAGAAAAGGATGTGGAGAAGAAAGGGAGGGGGCAGTGGAAGAGAACTAGGGTTTTTACTGTGGAGAAAGATGACCAAAGCGATTCCTCTCTGAAAATGGAGTGGAAGGTTAAAAGAGGGAGAAAGAGGAACGCATTGGCTGTTTCAGCTCCAACTCCTTTACTCAATAGTTATCATCTTAGGTCACCGGATTCGTTGACGGCTAATGGCTGTGAATCGTCTACAAATGCGGGGGCGGCAAATCGGGGAAGCAAGGGAAAGGCATTGACGGCTGCATCTCCCTCTCCCTTGTTTACTTGTTATCATCACAAATCGCCCAATTCTGATGAGCACCAAGATTTGTTGGTGGATGGTGAAGAGATGAAGAAAGTTGATGGTTGCAGTTCATTTGTGAAGGCGGATGAAAAGGTGAAACGGGGAAGGAAGAAGGCAATGGTGACTTCTGTTCCTTCTCCTTTATATCTGCATGCCTGTATCGATGGCATTGTGGAGTCTCCCTGCTCGATTTTTTCTTCTGCTTCTTCTCCTCTGGGCGATCCCTACAATCCCAAGAAGAAAAGAAAATTTGGAAAGGCGAATTTGGTTTCTGATTGCTCAAGCTGCCGCAAGAGTCGGCACTGTTTTGGGTGCGTTCTGAGGTCTTCTAAGATTTCATATGAGATGGGCATGAAAGATTTACCATCCAAGGCTGCCTGCAGAGATTTAGATAGGCTTCATAAAGTTGAATACAACTTCCGTTTGCTCCATCTTCTGCTACCTTCTTTGAGGCAACTAAATCAGAAGCAGGACTCTGAAAAGAAAATAGAGTCATCCATTCAAGATGTTCAATTATCTGAGTTGATGATACAGAAGTCTACTTGCGAAAAAGATGAGAGAGCCTTTTGTAACTTCTGCAAAACATCGATTTTTGACCTTCACAGAAGCTGCCCAAATTGTGAATTTGAATTGTGCATTGATTGTTGTAAAGAGATTCGTGAGAACAATCTTTCTTGTGCAGAAAAAGTGCTTCCTCTTCCAAATAGGGGGAAAGAATATATGCATGGCGGAAAACCTACAGAAAATTATGTTTCTAATCTCAAGAATGGAGGTGAAGAATTATCGCAATTTCATGCCGAATTTGCTAGGTGGAAGGCTGATCATGATGGAAGAATTTATTGTCCGCCAAAGGCAGTGGGAGGGTGTGGCAGTGCTGCCTTGAAATTAAAATGCATGCATCCAGAAGGTTTGATCTCCAGATTGGAAGCTGAGGCTGAAATGTTTTATAAGAGATTTGGATTCTTACAAGATTCTGCTAATACTGCAAAAGCAAGCTGTAGTTGCTCGATTACAAGTAGAAATTCGAGAAAAGCAGCTTCCAGGAAAGATTCAGCTGACAATTTCTTATATTGCCCACATTCAAGTTGCATTGATCTGATTGAGTTTAAACATTTTCAAAAGCATTGGGCTAACGGGGAACCAGTGGTTGTGCGTGGGGTTCTTGATAAGAAATCGCATTTAAGCTGGGAACCTAAGGCTATGTGGCAACAACTATGCAGAAGTAAGGCTAGTCCTGAATCTGCTCAGCTTGAGACCATTGATTGCCTAGCATCTTGTAAGGTTGAGATAAAGAGCGATGATTTTTTCAAGGGCTACATGGAAGGGCGAATGTATAACAATTTTTTGCCAGAGATGCTTAAATTTAAGGATTGGCCTACTTCAACGCATTTTGAGGACTGCTTGCCATCCCACGGAGATGAATTTGTCATTTCTCTGCCATTTCAAGAGTATACAAATCCTCGATCAGGTCCTTTGAATATTTCCATTGCTCTTCCTAAGGACATGCTGAAGTTGGACATGGGCCCAAAATCATATATTGCATATGGAATGGCAGAAGAACTAGGCAGGGGAGACTCAGTTACCAAGCTTCACTGTGATGTTTCGGATGCAGTGAATGTTTTAATGCATACTGCAGAGGTCTTACTAAGTAAAGGCCAAAAGCATGCTATAGAAAGGCTGAAGAGGATGCACAGAGATCAAGATGAAAGAGAGCTAGGCAATTATGGCAGTGAACTTCCTGTTCTGAATAATGAATATGAACAGCAAGATCAAATCCACAATGGAGGAGCTCTTTGGGATATATTTAGGAGAGAAGATGTAGAAACACTCAAAACATACCTCAGGAAACATTCAAAGGAATTTCGCCATACCTATTGTTCCCCGGTTGAGCAGGTATTTAATCCGGTCCATGATGAGGTGTTTTATCTAACAATAGGCCACAAAAGAAAACTAAAAGAAGAATTCGGAATAGAGCCATGGACATTCACTCAAGAGCTGGGTGAAGCAGTATTCATCCCAGCTGGTTGTCCACATCAAGTGCGCAACCTCAAGTCTTGCACAAAAGTTGCCCTAGATTTTGTCTCTCCTGAAAATGTAAATGAATGCTTAAGGCTGACTGAGGATTTCAGACTGCTTCCAGAAAATCATAGGGCCAAAGAAGATAAGTTAGAGGTTATATTTGAATATTTGCCAGTTTCTTTTTCTGGAACTTTTTCTTTTAATAAATGCTACAAGCTTAAAATCATTACGGTATGATTCTTTGCAGATAAAAAAGATGATTATTTATGCTGTTAGTAGTGCTGTGTGTGCTCTCAGAGAAGAAGCCTTCGATTAGTTCGTCTGATTTTTTAGGTTAGTGTTAGCATTTTCTTATGAAGGAATCATCAAATTTTAATTCTGTTGTGGGATAGACTAATGGTTAAGCTAATCAGATTCAGAACCAAATGAAATTCTGATCTTACCAACTTGAATGTTACTTCACAATTTTGTAAATACAAAAAGAAGAAAACTGTGTTATTTCTTGAGTGCATTTTTTAATATATCTCTGATCACTA

Network for GWHGAAEX011485

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02373.21	JmjC	771	870	7.40E-12

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	Jumonji

KEGG pathway

KO	Enzyme	pathway	mapID
K15601	KDM3	Thermogenesis	map04714

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	3.150
SRP064423	SRR2545915	Juvenile tuber	3.000
SRP108465	SRR5643513	five period of Gastrodia elata	2.400
	SRR5643514	five period of Gastrodia elata	2.470
	SRR5643515	five period of Gastrodia elata	2.680
	SRR5643524	five period of Gastrodia elata	2.190
	SRR5643525	five period of Gastrodia elata	1.380
	SRR5643528	five period of Gastrodia elata	1.450
	SRR5643658	five period of Gastrodia elata	1.230
	SRR5643659	five period of Gastrodia elata	2.300
	SRR5643660	five period of Gastrodia elata	1.780
	SRR5643661	five period of Gastrodia elata	1.630
	SRR5643662	five period of Gastrodia elata	2.370
	SRR5643663	five period of Gastrodia elata	1.930
	SRR5643664	five period of Gastrodia elata	1.710
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	1.180
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	2.830
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	2.120
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	1.520
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	0.660
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	0.560
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	1.580
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	0.790
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	1.080
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	0.460
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	2.550
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	2.550
SRP279888	Gastro	Gastrodia elata tuber	0.89
	Juven	Juvenile tuber	1.68
	Mother_Gastro	Mother tuber of Gastrodia elata	1.25
	Mother_Juven	Mother tuber of Juvenile	1.31