Detail information of GWHGAAEX011487/evm.TU.scaffold_38.54


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|18977943|ref|NP_579300.1|1.00E-63proteasome subunit alpha [Pyrococcus furiosus DSM 3638]
KOGKOG01782.00E-15720S proteasome, regulatory subunit alpha type PSMA4/PRE9
nrgi|672142206|ref|XP_008794958.1|3.39E-166PREDICTED: proteasome subunit alpha type-4 [Phoenix dactylifera]
Swissprottr|P52427|PSA4_SPIOL2.00E-161Proteasome subunit alpha type-4
trEMBLtr|M5WUT5|M5WUT5_PRUPE1.00E-165Proteasome subunit alpha type {ECO:0000256|RuleBase:RU000551}
TAIRAT3G221102.00E-15720S proteasome alpha subunit C1

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000004115883041630021+
Transcript Sequence

Network for GWHGAAEX011487

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF10584.8Proteasome_A_N5271.80E-13
PF00227.25Proteasome302158.30E-61
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02728PSMA4 Proteasome map03050

Gene Ontology

GO term OntologyName
GO:0051603Biological Processproteolysis involved in cellular protein catabolic process
GO:0006511Biological Processubiquitin-dependent protein catabolic process
GO:0004175Molecular Functionendopeptidase activity
GO:0004298Molecular Functionthreonine-type endopeptidase activity
GO:0019773Cellular Componentproteasome core complex, alpha-subunit complex
GO:0005839Cellular Componentproteasome core complex

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms49.570
SRR2545915Juvenile tuber61.980
SRP108465SRR5643513five period of Gastrodia elata78.050
SRR5643514five period of Gastrodia elata79.450
SRR5643515five period of Gastrodia elata73.260
SRR5643524five period of Gastrodia elata77.320
SRR5643525five period of Gastrodia elata72.390
SRR5643528five period of Gastrodia elata74.170
SRR5643658five period of Gastrodia elata64.730
SRR5643659five period of Gastrodia elata74.540
SRR5643660five period of Gastrodia elata82.400
SRR5643661five period of Gastrodia elata85.330
SRR5643662five period of Gastrodia elata76.090
SRR5643663five period of Gastrodia elata72.400
SRR5643664five period of Gastrodia elata84.740
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_181.530
SRR6049655Rhizomagastrodiae_C368-T10_good_159.060
SRR6049656Rhizomagastrodiae_C368-T07_good_176.190
SRR6049657Rhizomagastrodiae_C368-T07_good_173.710
SRR6049658Rhizomagastrodiae_C368-T04_good_163.000
SRR6049659Rhizomagastrodiae_C368-T04_good_168.960
SRR6049660Rhizomagastrodiae_C368-T01_good_171.090
SRR6049661Rhizomagastrodiae_C368-T04_good_167.170
SRR6049662Rhizomagastrodiae_C368-T01_good_195.760
SRR6049663Rhizomagastrodiae_C368-T01_good_176.560
SRR6049664Rhizomagastrodiae_C368-T10_good_199.460
SRR6049665Rhizomagastrodiae_C368-T10_good_199.460
SRP279888GastroGastrodia elata tuber 73.57
JuvenJuvenile tuber79.43
Mother_GastroMother tuber of Gastrodia elata 48.64
Mother_JuvenMother tuber of Juvenile 58.03