Detail information of GWHGAAEX011488/evm.TU.scaffold_38.56_evm.TU.scaffold_38.55
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|470156015|ref|YP_006284517.1| | 5.00E-57 | DNA polymerase IV [Pectobacterium sp. SCC3193] |
| KOG | KOG2093 | 1.00E-131 | Translesion DNA polymerase - REV1 deoxycytidyl transferase |
| nr | gi|743824136|ref|XP_010932702.1| | 0 | PREDICTED: DNA repair protein REV1 [Elaeis guineensis] |
| Swissprot | tr|Q8RXL1|REV1_ARATH | 0 | DNA repair protein REV1 |
| trEMBL | tr|I1Q4R0|I1Q4R0_ORYGL | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:ORGLA06G0212300.1} |
| TAIR | AT5G44750 | 1.00E-131 | DNA-directed DNA polymerases |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000041 | 1675702 | 1815423 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX011488
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF16589.4 | BRCT_2 | 69 | 157 | 4.60E-09 |
| PF00817.19 | IMS | 344 | 491 | 8.00E-44 |
| PF11799.7 | IMS_C | 576 | 693 | 1.50E-14 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K03515 | REV1 | Fanconi anemia pathway | map03460 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006281 | Biological Process | DNA repair |
| GO:0042276 | Biological Process | error-prone translesion synthesis |
| GO:0016779 | Molecular Function | nucleotidyltransferase activity |
| GO:0003684 | Molecular Function | damaged DNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 11.260 |
| SRR2545915 | Juvenile tuber | 13.100 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 7.680 |
| SRR5643514 | five period of Gastrodia elata | 7.030 | |
| SRR5643515 | five period of Gastrodia elata | 8.180 | |
| SRR5643524 | five period of Gastrodia elata | 7.970 | |
| SRR5643525 | five period of Gastrodia elata | 5.980 | |
| SRR5643528 | five period of Gastrodia elata | 6.300 | |
| SRR5643658 | five period of Gastrodia elata | 6.750 | |
| SRR5643659 | five period of Gastrodia elata | 9.250 | |
| SRR5643660 | five period of Gastrodia elata | 10.320 | |
| SRR5643661 | five period of Gastrodia elata | 14.510 | |
| SRR5643662 | five period of Gastrodia elata | 9.130 | |
| SRR5643663 | five period of Gastrodia elata | 9.850 | |
| SRR5643664 | five period of Gastrodia elata | 9.640 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 9.570 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 7.250 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 9.480 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 9.610 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 11.680 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 13.440 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 11.540 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 12.490 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 9.250 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 9.880 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 8.970 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 8.970 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 16.43 |
| Juven | Juvenile tuber | 13.12 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 16.73 | |
| Mother_Juven | Mother tuber of Juvenile | 19.01 |