Gene detail

Detail information of GWHGAAEX011493/evm.TU.scaffold_38.61

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|451947520\|ref\|YP_007468115.1\|	5.00E-24	dynamin family protein [Desulfocapsa sulfexigens DSM 10523]
KOG	KOG1954	0	Endocytosis/signaling protein EHD1
nr	gi\|586658767\|ref\|XP_006829517.1\|	0	hypothetical protein AMTR_s00074p00139810 [Amborella trichopoda]
trEMBL	tr\|W1NMZ6\|W1NMZ6_AMBTC	0	Uncharacterized protein {ECO:0000313\|EMBL:ERM96933.1}
TAIR	AT3G20290	0	EPS15 homology domain 1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000041	1863839	1879757	+

Transcript Sequence
>GWHTAAEX011493 AGCCAATGGAATGCCAGCATATCACAGTTTAGTGGTTAAAAAAAACATAGAGACCAAAATCACCCTCTACTTCAAATTAGGTTTTCGATCAACAAAGCAGGGGCTATCTCTCCCTTACGCGCGCTTGCTGGTCGCTCGATTGATTGCGCCGGATTGGTTCTGTTCTAACTCATCGATCTCATCTCCTCTCTTACTGCCACAATGGATATTGCGTTGCCTGTGGTGAGTTCCTGCCCCCGAGAGCATCAGAAGATCTACCAGGAATGGTTTGCCTTTGCGGATTCAGACGGAGACGGCCGCATCACGGGAAATGATGCAACCAAGTTCTTTGGGATGTCCAAGCTTTCACGCCCGGAGCTCAAACAGGTTTGGGCGATATCTGATTCTAAGAGGCAGGGCTTTCTTAGTTTCAGTGAGTTTATTACTGCAATGCAGCTTATTGCTGTGGGACAAGCAGGAAATAAGGTTACACCTGATGTCCTTAACAGCTTAGATTTGCAAAATCTACAACTTCCACAGATGGATGGTTTGGAAAAATTGCTTGCTAAAAAGAAGCCATCACCTAAGAAAAGTTCTACTGATTTAGATGCTCCTCCAACCCAAGTGCCGGCATCAAATCAGTGGTTCAACTCGAAATCGACAAAGAAGATTCCACTAAGCTCTGTTACTTCGATTATTGATGGTTTGAAGAGATTGTATATAGAAAAACTAAAGCCCCTGGAAGTTGTGTATCACTTCAATGAATTTGTTTCTCCTTCACTGACAAACAGTGACTTTGATGCCAAGCCCATGGTTATGCTCTTGGGTCAATATTCAACTGGAAAAACTACATTTATCAAGCATCTACTGAATACTAATTACCCAGGTGCTCACATTGGACCTGAGCCTACAACTGATAGATTTGTTGTCGTTATGTCCGGGCCGGACGAGAGGAGTATTCCCGGAAACACCATAGCCGTTCAAGCCGACATGCCCTTCAACGGCCTCACAACATTCGGAACCGCCTTCTTATCAAAATTTCAGTGCTCCCAAATGCCGCACCCATTGCTTGAGCACATCACCTTCGTGGACACGCCGGGCGTTCTGTCGGGGGAGAAGCAGAGGACCCAGCGCAGCTATGACTTCACTGGCGTCACCTCCTGGTTTGCTGCCAAGTGTGACCTCATCCTCCTCCTCTTTGACCCCCACAAGCTTGACATTAGCGACGAGTTCAAGCGCGTCATAAGTTCCCTACGCGGCCAGGACGATAAAATTCGTGTCGTCCTTAACAAGGCGGATCAGATTGGCACCCAGCAGCTGATGAGGGTTTATGGAGCACTAATGTGGTCCCTTGGGAAAGTGCTGAACACCCCTGAAGTTATGCGGGTCTATATAGGGTCATTCAATGACAAGCCGGTGAACGAAGGGGCAGTTGGGCCGATCGGAAAGGAGCTGTTTGAGAGGGAGCAGGAGGATCTGCTGTCTGATCTGAAGGATATTCCGAAGAAGGCGTGCGACCGGCAAATCAACGAGTTCGTGAAGAGGGCACGTGCGGCCAAGATTCATGCCTTCGTAATCAGTCATCTCAAGAAGGAGATGCCCTCCATGATGGGCAAAGCCAAGGCTCAGCAAAAACTCACCGACAATCTCGAAGACGAGTTCACCAAGGTGCAGAGGGAGCACCATCTTCCGGCCGGAGATTTGCCGAGCGTGGAGCGCTACAAGGAGGTTCTGAGCGGTTACAACATCGACAAGTTTGAGAGGCTGAAGCCTAGGTTGATTCAGGGTGTTGACGATATGCTGGCCCATGATATCCCCCAGCTCTTGAGGAACTTCAAAAACCCCTATGAATGATTTGTTTCAGAGACCATTTTGTTGCCCTTTTTTTTTTCATTTCAATTGCTCAAAGAAATATTTGTATGTGTTTTCTTCTATTGTAATATAAGGAGAATTGAACTTCAAATTTCTTTTAAATGCCATAAAAATGTAGTATTTTACTGCAAGAATCTGCATGTAGTGTAATGTGGCATGATTTTACACTTTTGATTTGTTCATTGTATAGCCTGAAGAGCAAAAGAGCAATGCTTTGTAAGTGCCATTTTCTGTAATAATTTTTCTTAAGAAAGTAGGTAAAATGTATACCGTTTGACCA

Network for GWHGAAEX011493

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12763.6	EF-hand_4	16	81	5.50E-07
PF16880.4	EHD_N	161	193	1.10E-13
PF00350.22	Dynamin_N	198	357	3.00E-11

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12483	EHD1	Endocytosis	map04144

Gene Ontology

GO term	Ontology	Name
GO:0005525	Molecular Function	GTP binding
GO:0005515	Molecular Function	protein binding
GO:0005509	Molecular Function	calcium ion binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	57.190
SRP064423	SRR2545915	Juvenile tuber	66.090
SRP108465	SRR5643513	five period of Gastrodia elata	45.930
	SRR5643514	five period of Gastrodia elata	52.870
	SRR5643515	five period of Gastrodia elata	47.960
	SRR5643524	five period of Gastrodia elata	49.650
	SRR5643525	five period of Gastrodia elata	41.720
	SRR5643528	five period of Gastrodia elata	35.950
	SRR5643658	five period of Gastrodia elata	43.600
	SRR5643659	five period of Gastrodia elata	44.410
	SRR5643660	five period of Gastrodia elata	46.200
	SRR5643661	five period of Gastrodia elata	46.890
	SRR5643662	five period of Gastrodia elata	46.800
	SRR5643663	five period of Gastrodia elata	46.850
	SRR5643664	five period of Gastrodia elata	48.590
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	65.160
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	59.350
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	64.640
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	66.140
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	89.640
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	85.820
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	71.190
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	78.250
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	69.730
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	70.340
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	72.550
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	72.550
SRP279888	Gastro	Gastrodia elata tuber	65.07
	Juven	Juvenile tuber	59.43
	Mother_Gastro	Mother tuber of Gastrodia elata	62.73
	Mother_Juven	Mother tuber of Juvenile	59.68